Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   F4V27_RS06715 Genome accession   NZ_CP044167
Coordinates   1297761..1298144 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0415     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1292761..1303144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V27_RS06695 - 1292840..1294774 (-) 1935 WP_150968563.1 ribonuclease R family protein -
  F4V27_RS06700 ilvC 1294893..1295915 (+) 1023 WP_002921147.1 ketol-acid reductoisomerase -
  F4V27_RS06705 - 1295919..1297001 (+) 1083 WP_002938302.1 divergent polysaccharide deacetylase family protein -
  F4V27_RS06710 dprA 1296991..1297764 (+) 774 WP_002938303.1 DNA-processing protein DprA Machinery gene
  F4V27_RS06715 dprB 1297761..1298144 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  F4V27_RS06720 - 1298173..1299012 (+) 840 WP_074469326.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  F4V27_RS06725 msrA 1299188..1299685 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  F4V27_RS06730 ppa 1299726..1300244 (-) 519 WP_002855031.1 inorganic diphosphatase -
  F4V27_RS06735 adk 1300254..1300832 (-) 579 WP_002855137.1 adenylate kinase -
  F4V27_RS06740 aspS 1300829..1302580 (-) 1752 WP_002938312.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=341328 F4V27_RS06715 WP_002856861.1 1297761..1298144(+) (dprB) [Campylobacter jejuni strain AR-0415]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=341328 F4V27_RS06715 WP_002856861.1 1297761..1298144(+) (dprB) [Campylobacter jejuni strain AR-0415]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATTGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment