Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   F4V27_RS01025 Genome accession   NZ_CP044167
Coordinates   202684..203349 (-) Length   221 a.a.
NCBI ID   WP_002853205.1    Uniprot ID   Q0P933
Organism   Campylobacter jejuni strain AR-0415     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 197684..208349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V27_RS01010 groES 199540..199800 (+) 261 WP_002937819.1 co-chaperone GroES -
  F4V27_RS01015 groL 199821..201458 (+) 1638 WP_002853460.1 chaperonin GroEL -
  F4V27_RS01020 dccS 201501..202691 (-) 1191 WP_057100425.1 two-component system sensor histidine kinase DccS -
  F4V27_RS01025 ciaR 202684..203349 (-) 666 WP_002853205.1 two-component system response regulator DccR Regulator
  F4V27_RS01030 - 203497..204096 (+) 600 WP_002866222.1 bacteriohemerythrin -
  F4V27_RS08870 - 204107..204346 (+) 240 Protein_208 ribbon-helix-helix domain-containing protein -
  F4V27_RS01045 - 204735..205982 (-) 1248 WP_002853920.1 ArsS family sensor histidine kinase -
  F4V27_RS01050 - 205979..206653 (-) 675 WP_002777451.1 response regulator transcription factor -
  F4V27_RS01055 htrA 206729..208147 (-) 1419 WP_057100424.1 serine protease HtrA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25633.32 Da        Isoelectric Point: 4.6834

>NTDB_id=341300 F4V27_RS01025 WP_002853205.1 202684..203349(-) (ciaR) [Campylobacter jejuni strain AR-0415]
MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFM
TSLNTTNDLKQGFDAGCDDYIKKPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGYCYG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=341300 F4V27_RS01025 WP_002853205.1 202684..203349(-) (ciaR) [Campylobacter jejuni strain AR-0415]
ATGGCTGCTAAAATTTTACTTTTAGAAGATGATTTGAGCTTGAGTGAGATCATTGAAGAGTTTTTAAACGATGAAGGATA
TGAAGTATTTTTATGCGATAATGCACAAGAAGCTTTAGATATGGCTTATGAAAGATATTTTGATCTTTGGATTTTAGATG
TAAAAGTTCCTTTAGGAGATGGATTTTCATTACTTAAAGAATTAAGAAAAAGCGGAAAGCAAACTCCAGCAATTTTCATG
ACTTCTTTAAACACAACAAACGATTTAAAACAAGGCTTTGACGCAGGTTGTGATGATTATATAAAAAAACCTTTTGAACT
TGCCGAGTTATCTATCAGGGTTAAAGCTTTGCTTAAAAGAGCTTTTTCACATAAAAATGAAGATTTTGAAGATTTAGGAG
ATGGATTTAGATTTGAATTTACTACACAAATTCTTTACCATAATAATAAAGCCTTGACTTTACCGAGTAAAGAAATTAAG
CTTTTGTCTTTATTACTTAAAAATAAAAACAACTTTTTAAGCACAGAGAGAATTTTTGAAGAACTCTGGGATTATGATGA
GGAGCCTAGTGAGCTAAGTTTAAGGGCTTATGTGAAAAATTTACGTAAAATTTTAGGAAAAGAAAAAATTATAAATCAAA
GAGGTAGGGGATATTGCTATGGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P933

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae D39

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae R6

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae TIGR4

36.364

99.548

0.362