Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   F4V32_RS07595 Genome accession   NZ_CP044161
Coordinates   1448423..1449019 (+) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain AR-0420     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1443423..1454019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V32_RS07580 ctsR 1446130..1446441 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  F4V32_RS07585 ctsD 1446419..1447837 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  F4V32_RS07590 ctsP 1447830..1448426 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  F4V32_RS07595 ctsX 1448423..1449019 (+) 597 WP_002779313.1 CDC27 family protein Machinery gene
  F4V32_RS07600 ctsE 1449012..1450574 (+) 1563 WP_052784799.1 GspE/PulE family protein Machinery gene
  F4V32_RS07605 ctsF 1450561..1451736 (+) 1176 WP_002834117.1 type II secretion system F family protein Machinery gene
  F4V32_RS07610 - 1451733..1452497 (-) 765 WP_002784060.1 TSUP family transporter -
  F4V32_RS07615 - 1452500..1453264 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=341229 F4V32_RS07595 WP_002779313.1 1448423..1449019(+) (ctsX) [Campylobacter coli strain AR-0420]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=341229 F4V32_RS07595 WP_002779313.1 1448423..1449019(+) (ctsX) [Campylobacter coli strain AR-0420]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434