Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SGPB_RS06205 Genome accession   NC_015600
Coordinates   1239315..1239755 (-) Length   146 a.a.
NCBI ID   WP_003065254.1    Uniprot ID   E0PEB8
Organism   Streptococcus pasteurianus ATCC 43144     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1234315..1244755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS06190 (SGPB_1192) - 1234491..1235468 (-) 978 WP_013851964.1 alcohol dehydrogenase catalytic domain-containing protein -
  SGPB_RS06195 (SGPB_1193) rcrQ 1235735..1237507 (-) 1773 WP_013851965.1 ABC transporter ATP-binding protein Regulator
  SGPB_RS06200 (SGPB_1194) rcrP 1237497..1239311 (-) 1815 WP_003065252.1 ABC transporter ATP-binding protein Regulator
  SGPB_RS06205 (SGPB_1195) rcrR 1239315..1239755 (-) 441 WP_003065254.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SGPB_RS06210 (SGPB_1196) - 1239930..1240340 (-) 411 WP_003065257.1 peptide deformylase -
  SGPB_RS06215 (SGPB_1197) - 1240337..1240846 (-) 510 WP_003065260.1 GNAT family N-acetyltransferase -
  SGPB_RS06220 (SGPB_1198) gdhA 1241123..1242472 (-) 1350 WP_003065263.1 NADP-specific glutamate dehydrogenase -
  SGPB_RS06225 (SGPB_1199) - 1242718..1243215 (+) 498 WP_003065265.1 DUF308 domain-containing protein -
  SGPB_RS11180 (SGPB_1200) queF 1243271..1243762 (-) 492 WP_003065267.1 preQ(1) synthase -
  SGPB_RS11185 (SGPB_1201) queE 1243775..1244488 (-) 714 WP_003065269.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17097.56 Da        Isoelectric Point: 8.4684

>NTDB_id=34111 SGPB_RS06205 WP_003065254.1 1239315..1239755(-) (rcrR) [Streptococcus pasteurianus ATCC 43144]
MHKKDPFSQFRDFINLAENRVHALAESHGVENLAGPQGFAVLYLHDNPDKEIYIKDIEKRLRISKSVTSNLIKRMEKNGF
IQIISSIEDKRYKQVVLTELGKSKAQNIQDFYDEMHRQILAGVDHEDLKISFRVFDRILKNLENKE

Nucleotide


Download         Length: 441 bp        

>NTDB_id=34111 SGPB_RS06205 WP_003065254.1 1239315..1239755(-) (rcrR) [Streptococcus pasteurianus ATCC 43144]
ATGCATAAGAAAGATCCGTTTTCACAGTTTAGGGATTTTATCAATTTAGCGGAAAATCGTGTCCATGCTCTTGCGGAAAG
TCATGGTGTTGAAAATCTGGCTGGTCCACAGGGATTTGCAGTGTTGTATCTCCATGATAATCCTGATAAAGAAATTTATA
TCAAGGATATTGAGAAGAGACTAAGAATTTCAAAGTCAGTGACTAGTAATTTGATTAAGCGCATGGAGAAAAATGGTTTT
ATCCAAATTATTTCGTCAATAGAAGATAAGCGTTATAAGCAAGTGGTGTTGACTGAACTTGGAAAATCAAAGGCTCAAAA
CATTCAAGATTTCTATGATGAAATGCATAGACAAATCTTAGCTGGTGTTGACCATGAGGATCTCAAAATTTCGTTTCGCG
TCTTTGACCGCATTTTGAAAAATTTAGAAAACAAGGAGTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(35-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PEB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

55.944

97.945

0.548

Multiple sequence alignment