Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SGPB_RS06195 Genome accession   NC_015600
Coordinates   1235735..1237507 (-) Length   590 a.a.
NCBI ID   WP_013851965.1    Uniprot ID   F5X758
Organism   Streptococcus pasteurianus ATCC 43144     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1230735..1242507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS06165 (SGPB_1187) - 1231109..1231735 (-) 627 WP_013851960.1 ABC transporter permease -
  SGPB_RS06170 (SGPB_1188) - 1231728..1232486 (-) 759 WP_172456431.1 ABC transporter ATP-binding protein -
  SGPB_RS06175 (SGPB_1189) - 1232514..1233434 (-) 921 WP_013851962.1 glycine betaine ABC transporter substrate-binding protein -
  SGPB_RS06180 (SGPB_1190) - 1233424..1234059 (-) 636 WP_013851963.1 ABC transporter permease -
  SGPB_RS06185 (SGPB_1191) - 1234049..1234501 (-) 453 WP_003065246.1 MarR family winged helix-turn-helix transcriptional regulator -
  SGPB_RS06190 (SGPB_1192) - 1234491..1235468 (-) 978 WP_013851964.1 alcohol dehydrogenase catalytic domain-containing protein -
  SGPB_RS06195 (SGPB_1193) rcrQ 1235735..1237507 (-) 1773 WP_013851965.1 ABC transporter ATP-binding protein Regulator
  SGPB_RS06200 (SGPB_1194) rcrP 1237497..1239311 (-) 1815 WP_003065252.1 ABC transporter ATP-binding protein Regulator
  SGPB_RS06205 (SGPB_1195) rcrR 1239315..1239755 (-) 441 WP_003065254.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SGPB_RS06210 (SGPB_1196) - 1239930..1240340 (-) 411 WP_003065257.1 peptide deformylase -
  SGPB_RS06215 (SGPB_1197) - 1240337..1240846 (-) 510 WP_003065260.1 GNAT family N-acetyltransferase -
  SGPB_RS06220 (SGPB_1198) gdhA 1241123..1242472 (-) 1350 WP_003065263.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65280.39 Da        Isoelectric Point: 5.2282

>NTDB_id=34109 SGPB_RS06195 WP_013851965.1 1235735..1237507(-) (rcrQ) [Streptococcus pasteurianus ATCC 43144]
MENKKKTSFYGRMKPYIRGFQLPFLLAVIGAIVSATVTVIGPDKLKEITNTITKGLTPTATGMIPGIDLDKVGKIALTLA
ILYVISAVVGYIQSFTVATIVQRFSQRLRKAIQTKIDKVPLNYFDSHSQGDTLSRVTNDVDLLGQSLNQSLGTLVTSTML
LIGSIFMMFHSNVSMALTAIGSVLIGFVLVMVIMGSSQPLFKRQQNNLAAINGYVEEIYSGHNVVTSYNAAGETSETFKK
LNTNLYKSMWQSQFLSGIMMPLMIFVGNFGYVMVCVVGAVKVINGDITMGDVVAFMTYVRIFSQPLSQIAQAFTQMQSAT
AAMSRVFEFLEEDEMEDESDKERQLSDVNGEVTFDNVFFGYSKDKTIIHDFSAVAKPGQKVAIVGPTGAGKTTIVNLLMK
FYEIDKGQITIDGVDTRLMTREEVHDQFSMVLQDTWLFEGTIKENLIYNQENITDEQVIAAAKAVGVHHFIMTLPKGYDT
YLDDSVTLSIGQKQLLTIARALLKDSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDDLMQQGGFYADLYNSQFEVA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=34109 SGPB_RS06195 WP_013851965.1 1235735..1237507(-) (rcrQ) [Streptococcus pasteurianus ATCC 43144]
ATGGAAAATAAGAAAAAAACATCTTTCTATGGCAGAATGAAGCCCTATATTAGAGGTTTCCAGCTTCCATTTCTTCTTGC
AGTGATTGGAGCAATTGTTTCTGCGACGGTTACGGTTATTGGACCTGATAAATTAAAAGAAATCACCAATACAATCACCA
AAGGTTTGACACCAACGGCGACTGGTATGATTCCAGGAATCGACTTGGATAAAGTTGGTAAAATTGCATTAACTTTGGCA
ATTTTATACGTTATTTCAGCAGTAGTTGGTTATATTCAAAGCTTTACCGTAGCGACTATCGTTCAACGTTTTTCACAACG
TTTACGTAAAGCTATTCAGACCAAAATTGACAAGGTTCCATTGAATTACTTTGATAGTCATTCGCAAGGGGACACCCTTT
CTCGTGTGACAAATGACGTTGACTTGCTTGGTCAATCGCTTAACCAAAGTTTGGGAACTTTGGTGACATCAACCATGTTA
TTGATTGGATCAATTTTCATGATGTTCCATTCAAATGTCAGCATGGCTCTAACAGCGATTGGGTCTGTTCTGATTGGTTT
TGTTTTGGTTATGGTTATCATGGGCTCATCACAACCATTGTTCAAACGTCAACAAAATAACTTGGCTGCGATTAATGGTT
ATGTTGAAGAAATTTACTCTGGTCATAATGTGGTAACAAGTTATAACGCTGCTGGTGAAACAAGCGAAACCTTTAAAAAA
TTAAACACCAATCTTTATAAATCAATGTGGCAATCACAGTTCTTGTCAGGTATTATGATGCCGCTTATGATTTTCGTTGG
GAACTTTGGTTATGTTATGGTCTGTGTGGTTGGTGCCGTTAAAGTTATCAATGGTGATATTACCATGGGGGATGTGGTTG
CCTTTATGACTTATGTTCGTATCTTCTCACAACCATTGTCACAAATTGCGCAAGCTTTCACACAAATGCAATCAGCAACA
GCTGCCATGAGCCGTGTCTTTGAATTCCTTGAAGAAGATGAAATGGAAGATGAGTCTGATAAGGAACGTCAACTTAGTGA
TGTTAATGGTGAAGTTACCTTTGATAATGTTTTCTTTGGTTATTCTAAGGATAAAACAATTATCCATGATTTCTCCGCTG
TGGCGAAACCTGGTCAGAAAGTTGCCATTGTTGGACCAACAGGCGCTGGTAAAACAACCATTGTTAACCTGCTCATGAAA
TTCTATGAAATCGATAAAGGTCAAATCACTATTGATGGTGTGGATACACGTTTGATGACACGTGAAGAAGTGCATGACCA
ATTCTCAATGGTGCTTCAAGATACGTGGTTGTTTGAAGGAACAATCAAAGAAAACTTGATTTACAATCAAGAAAATATTA
CAGACGAACAAGTTATTGCAGCGGCTAAGGCTGTTGGTGTTCATCACTTTATCATGACACTTCCAAAAGGTTATGACACT
TATCTTGATGATTCTGTAACACTTTCAATTGGTCAAAAACAACTCTTGACGATTGCGCGTGCTCTTTTGAAAGATTCACC
GCTCCTTATTTTGGATGAAGCAACGTCATCAGTTGATACACGTACTGAAGAATTGATTCAAAAAGCCATGGATAAATTGA
TGGAAGGTCGTACATCATTTGTTATCGCTCACCGTTTGTCAACGATTAGAAACGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATCATCGAACAAGGCAATCACGATGATTTGATGCAACAAGGCGGATTCTATGCTGACCTCTACAACTCACAATT
TGAAGTAGCTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(370-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5X758

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

73.311

100

0.736

Multiple sequence alignment