Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   SGPB_RS03595 Genome accession   NC_015600
Coordinates   695577..699209 (+) Length   1210 a.a.
NCBI ID   WP_013851663.1    Uniprot ID   F5X5R9
Organism   Streptococcus pasteurianus ATCC 43144     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 690577..704209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS03590 (SGPB_0664) rexB 692345..695587 (+) 3243 WP_013851662.1 ATP-dependent nuclease subunit B Machinery gene
  SGPB_RS03595 (SGPB_0665) rexA 695577..699209 (+) 3633 WP_013851663.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SGPB_RS03600 (SGPB_0666) - 699314..700459 (-) 1146 WP_013851664.1 cobalamin-independent methionine synthase II family protein -
  SGPB_RS03605 (SGPB_0667) - 700668..701402 (+) 735 WP_013851665.1 PHP domain-containing protein -
  SGPB_RS03610 (SGPB_0668) - 701416..702039 (+) 624 WP_013851666.1 alpha/beta fold hydrolase -
  SGPB_RS10400 (SGPB_0669) - 702117..702293 (-) 177 WP_003064151.1 DUF3042 family protein -
  SGPB_RS03615 (SGPB_0670) miaA 702482..703369 (+) 888 WP_003064153.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -

Sequence


Protein


Download         Length: 1210 a.a.        Molecular weight: 138599.34 Da        Isoelectric Point: 4.9633

>NTDB_id=34092 SGPB_RS03595 WP_013851663.1 695577..699209(+) (rexA) [Streptococcus pasteurianus ATCC 43144]
MIFKPFLTSEDISSLQIQEAQSSKKQKRTPEQIEAIYSYGNNILVSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFT
VKAAGELKERIEKKISQALQETTDNDLKNYLNEQLLGLQTADIGTMDAFTQKLVNQYGYTLGISPTFRIMTDKSEQDILK
NEVFFDLFSDYMTGNNAELFRQLVRNFSGNRKDSTAFRGIVYKIYDFSQATDNPQKWLAEVFLKGAKTYTDFSAIPDQEV
TDFLTCLHDTADQLQDVTDLEDYKQKTAKGTPTANYKKHLNIIEHLREWAQHFETLYGRDGLGRLATDVAKLLPAGPAVT
VAGTKYPVFKTLQGRLTGLKHLETIFKYQPESLPLLELLQAFMQDFSEQYLQAKIQENAFEFSDIAHFAIQILEENADIR
ELYQNKYHEVMVDEYQDNNHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPDHGKLILLKENFR
SQSEVLDATNSIFTHLMDEAVGEILYDDTHKLVAGSPAQKESHPENKTQVLIYDIDNNSDLPSDAEEGQINPNEVKLVAK
EIIRLHNEEHVAFEDITLLVSSRTRNDGILQTFEHYGIPLVTDGGEQNYLKSVEVMVMLDTLRALDNPLNDYALVALMRS
PMFSFNEDELARLALQTTEDDHRANLYQKLEHALAGKGSHNELMTITLHDKLADFMVCFVAWREFAKWHALYDLIWKIYN
DRFYYDYVGNLPRAEQRQANLYALALRANNFERTGFKGLSRFIRMIDKVLESENDLADVEVALPKNAVNLMTIHKSKGLE
FKYVFILNIDKKFSIQDLMSPLILSRQNGAGIKYLADMKGELETDVFPTVKVSMDTLPYQLNKRELRLATLSEQMRLFYV
AMTRAEKKLYLVGKASSEKLVDKYSGKSENNHLPVAERENFMTFQDWVLAIYEAYSKENTPFAVDFVTDEDLTDDKIGKI
EVTSVITPDDLTDNRQSENITEAVDRLEAVEKLNAKYHAAINLPSLRTPSQVKKLYEPVMDTDGVDVMTKAYQAQPTFEL
PDFSKKAKIEATAIGSAMHELMQRIPLSKQVTIADITAALAQVSAEDEVKARIRLENVLAFFENSELGQLIQQHTDKIYR
EAPFAMLKEDPDSKEKFVVRGIVDGYLVLDDRIVLFDYKTDKYKNSEEIKERYQGQMALYAEALSKSYDRKNVDKYLVLL
GGEQLEVVKL

Nucleotide


Download         Length: 3633 bp        

>NTDB_id=34092 SGPB_RS03595 WP_013851663.1 695577..699209(+) (rexA) [Streptococcus pasteurianus ATCC 43144]
ATGATCTTTAAACCATTTCTAACGTCAGAAGACATTTCTTCTCTACAAATCCAAGAAGCACAGTCATCCAAAAAACAAAA
ACGCACGCCAGAACAAATCGAAGCTATTTATAGTTATGGCAATAATATTTTGGTGTCTGCATCGGCTGGTTCTGGGAAAA
CCTTTGTCATGGTTGAACGCATTATTGATAAAATTTTGCGTGGTGTGACGATTGACCAGCTATTCATTTCAACCTTCACG
GTCAAGGCTGCTGGGGAATTAAAAGAGCGTATTGAGAAGAAAATTAGCCAAGCTCTGCAAGAAACGACTGACAATGATTT
GAAAAATTATCTCAATGAGCAGTTGCTGGGCTTACAGACAGCTGATATTGGAACCATGGATGCTTTTACGCAGAAATTGG
TCAATCAATACGGCTACACGCTGGGAATTTCACCAACTTTCCGTATTATGACGGATAAGAGTGAGCAAGATATTTTGAAA
AATGAAGTCTTTTTTGACCTTTTTTCTGATTACATGACAGGAAATAATGCTGAGCTTTTTCGTCAATTAGTGCGGAATTT
TTCTGGTAATCGTAAGGATAGCACCGCTTTTAGAGGCATTGTTTATAAAATTTATGATTTTAGTCAAGCAACCGATAATC
CACAGAAGTGGTTGGCAGAAGTATTTTTAAAAGGTGCTAAAACTTATACCGATTTTTCAGCAATTCCTGACCAAGAAGTC
ACGGATTTTCTGACTTGCTTGCATGATACGGCTGACCAGTTGCAAGATGTGACTGATTTAGAAGACTACAAGCAAAAAAC
AGCCAAAGGAACACCCACAGCCAATTATAAAAAGCATTTGAATATCATTGAGCATTTGCGTGAATGGGCACAGCATTTTG
AAACTCTTTATGGTCGTGACGGACTTGGACGGTTGGCGACAGATGTGGCGAAATTGCTTCCAGCTGGTCCTGCTGTGACA
GTTGCAGGAACGAAATATCCCGTCTTTAAAACCTTACAGGGGCGTTTGACTGGTTTGAAACATTTGGAAACCATTTTTAA
ATACCAGCCAGAAAGCCTTCCGTTGCTAGAGCTATTGCAGGCATTTATGCAAGATTTTTCAGAGCAATATTTACAAGCGA
AAATCCAAGAAAATGCTTTTGAATTTTCGGATATTGCCCATTTTGCCATTCAGATTTTGGAAGAAAACGCTGATATTCGT
GAACTTTATCAGAATAAGTATCACGAAGTCATGGTCGATGAGTACCAAGATAATAACCACACGCAAGAACGCATGTTGGA
GTTGTTGTCGAATGGTCATAATCGATTTATGGTGGGGGATATCAAGCAATCCATTTACCGCTTCCGTCAAGCCGACCCAC
AGATTTTTAACCAAAAATTTAAAGATTTTCAAGAACATCCTGACCATGGGAAATTAATTTTGTTAAAAGAGAATTTCCGT
AGTCAGTCAGAAGTTTTAGATGCGACAAACAGTATTTTTACGCATTTAATGGACGAGGCTGTTGGTGAGATTTTGTACGA
TGACACACATAAATTGGTCGCTGGAAGCCCTGCTCAAAAGGAAAGTCACCCAGAAAATAAAACGCAAGTGCTTATCTACG
ACATTGATAACAATAGTGACTTGCCAAGTGATGCCGAAGAAGGACAAATCAACCCTAACGAAGTCAAGTTAGTGGCTAAA
GAAATCATTCGTTTGCACAATGAGGAACACGTTGCTTTCGAGGATATTACCTTGTTGGTCTCATCACGCACGCGTAACGA
CGGTATTTTACAAACCTTTGAACACTATGGTATTCCTTTGGTGACTGACGGTGGTGAGCAAAATTACCTTAAATCAGTCG
AAGTCATGGTTATGCTTGACACGCTTCGCGCCCTTGATAATCCGCTCAATGACTATGCCTTAGTGGCACTCATGCGTTCA
CCGATGTTTTCATTCAATGAAGATGAGCTGGCACGCCTTGCGCTACAAACAACAGAAGATGACCATAGAGCTAATTTGTA
TCAAAAATTGGAGCATGCTTTAGCTGGCAAAGGAAGTCATAATGAATTGATGACAATCACTTTACATGATAAATTGGCTG
ATTTTATGGTTTGTTTTGTTGCTTGGCGTGAATTTGCCAAATGGCATGCGCTTTATGACTTGATTTGGAAAATTTACAAC
GACAGATTTTACTATGATTACGTGGGCAATTTACCACGTGCTGAGCAACGTCAAGCGAATTTATATGCTTTAGCTCTTCG
TGCCAATAATTTTGAACGAACTGGTTTTAAAGGACTCTCACGATTTATTCGCATGATTGATAAGGTGTTAGAAAGTGAGA
ATGATCTTGCGGACGTTGAGGTGGCTCTGCCTAAAAATGCGGTGAACTTGATGACTATTCATAAAAGTAAAGGTCTCGAG
TTCAAGTATGTTTTCATTTTGAATATTGACAAGAAATTTAGTATTCAGGATTTGATGTCACCCTTGATTTTATCACGTCA
AAATGGTGCAGGTATCAAGTATCTAGCTGATATGAAAGGAGAGTTGGAAACGGACGTTTTCCCAACAGTCAAGGTTAGCA
TGGATACCTTGCCTTACCAGCTCAATAAGCGTGAATTGCGCTTAGCTACGCTTTCAGAACAAATGCGATTGTTTTACGTT
GCCATGACCCGCGCAGAAAAGAAATTGTATTTGGTCGGAAAAGCAAGCTCCGAAAAGTTAGTGGATAAATATAGCGGTAA
ATCAGAAAACAATCATTTGCCAGTGGCAGAACGTGAGAATTTCATGACCTTTCAAGATTGGGTGTTAGCCATTTATGAGG
CTTATAGCAAGGAGAACACGCCTTTTGCCGTTGATTTTGTCACGGACGAAGATTTGACAGATGATAAGATTGGTAAAATT
GAAGTCACTTCTGTGATAACGCCAGATGATTTGACAGATAACCGCCAGTCTGAAAATATCACGGAAGCCGTGGATAGATT
GGAAGCGGTCGAAAAGTTAAATGCGAAGTACCACGCAGCCATCAATTTGCCAAGTTTGAGAACGCCAAGTCAGGTCAAAA
AACTCTATGAGCCAGTTATGGATACTGACGGTGTTGACGTGATGACAAAAGCCTATCAAGCACAACCAACATTTGAATTG
CCAGATTTTTCGAAGAAAGCCAAAATTGAAGCGACAGCCATTGGTTCGGCAATGCATGAACTCATGCAACGTATTCCTCT
ATCAAAACAGGTGACGATAGCCGATATTACCGCGGCGTTAGCCCAAGTTTCGGCAGAAGATGAGGTGAAAGCACGTATTC
GTTTGGAAAATGTCCTAGCCTTTTTTGAAAATTCAGAGCTCGGTCAGTTGATTCAGCAACATACGGACAAGATTTATCGT
GAAGCACCTTTTGCCATGTTAAAAGAGGACCCTGACAGTAAGGAAAAATTCGTTGTCCGTGGGATTGTCGATGGTTACCT
TGTCTTAGATGACCGCATCGTACTCTTTGATTACAAGACTGATAAATACAAAAATAGCGAGGAAATCAAGGAACGCTATC
AAGGACAAATGGCTTTATATGCAGAAGCTCTCAGCAAGTCTTATGATAGAAAAAACGTTGATAAATACCTCGTGTTGCTT
GGTGGCGAACAGCTAGAAGTTGTTAAACTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB F5X5R9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.431

100

0.535


Multiple sequence alignment