Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EAT1B_RS02555 Genome accession   NC_012673
Coordinates   469444..471141 (-) Length   565 a.a.
NCBI ID   WP_012726566.1    Uniprot ID   -
Organism   Exiguobacterium sp. AT1b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 464444..476141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAT1B_RS02530 (EAT1b_0511) yqiS 465017..465913 (-) 897 WP_012726562.1 phosphate butyryltransferase -
  EAT1B_RS02535 (EAT1b_0512) - 466035..467672 (-) 1638 WP_012726563.1 sigma-54-dependent Fis family transcriptional regulator -
  EAT1B_RS02540 (EAT1b_0513) - 467807..468076 (+) 270 WP_012726564.1 DUF2627 domain-containing protein -
  EAT1B_RS02550 (EAT1b_0514) spo0A 468712..469443 (-) 732 WP_012726565.1 sporulation transcription factor Spo0A -
  EAT1B_RS02555 (EAT1b_0515) recN 469444..471141 (-) 1698 WP_012726566.1 DNA repair protein RecN Machinery gene
  EAT1B_RS02560 (EAT1b_0516) ahrC 471155..471604 (-) 450 WP_012726567.1 transcriptional regulator AhrC/ArgR -
  EAT1B_RS02565 (EAT1b_0517) - 471760..472575 (-) 816 WP_012726568.1 TlyA family RNA methyltransferase -
  EAT1B_RS02570 (EAT1b_0518) dxs 472582..474474 (-) 1893 WP_193343261.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EAT1B_RS02575 (EAT1b_0519) - 474598..475476 (-) 879 WP_012726570.1 polyprenyl synthetase family protein -
  EAT1B_RS02580 (EAT1b_0520) xseB 475473..475697 (-) 225 WP_012726571.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63581.15 Da        Isoelectric Point: 4.6737

>NTDB_id=34091 EAT1B_RS02555 WP_012726566.1 469444..471141(-) (recN) [Exiguobacterium sp. AT1b]
MLAELSIKQFAIIDELNIPFNRGMTVLTGETGAGKSILLDAIGLLVGGRGSSEFVRYGQDKAEIEGLFMIEPDHPVIEAA
EQYGIDVEDGTVILRRDLHSSGKSVCRVNGKMMPLSTLREFGRLLVDIHGQHEHQHLMDAEFHLGILDHFAEKEISPLVE
EYQTAYAAWKQVADELKRLSQSEQELAQRMDLLSFQTKEIEAAELKVGEEQALTEERDELANFERIHQHIRLSYEAVAEE
SNGLDQIGVAMREMEEASQLSSSLSSVSETISNAYYLLEDAKFQLRDQLDSLEFDPIRLDEIESRLALFQQLKRKYGTTI
EEVITYGEQVSDELKSMTNREEHLQTLSDELIRLEQIARDAGMRLSSARKVAAESLQHAIHRELKELYMEKTAFEVRFKT
TSLKQDGLDDVEFYMMTNVGEPFKPLAKVASGGELSRVMLALKSIFSRTVGVASIIFDEVDTGVSGRVAQAMGEKIFRLS
VGSQVLCITHLAQVAAMADQHLYITKTETNERTKTNVTSLDRESRIDELGRMIAGAQMTDLTKQHVEELLEMSQQVKQKF
IKGVS

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=34091 EAT1B_RS02555 WP_012726566.1 469444..471141(-) (recN) [Exiguobacterium sp. AT1b]
ATGTTAGCAGAACTATCAATCAAACAGTTTGCGATTATTGACGAATTAAACATTCCGTTTAATCGAGGTATGACTGTGCT
CACGGGTGAGACAGGTGCCGGTAAATCGATCTTGTTGGATGCGATTGGATTGCTTGTTGGAGGACGTGGCTCAAGTGAGT
TCGTGCGATATGGTCAAGATAAAGCTGAAATCGAAGGTCTGTTCATGATTGAACCGGATCACCCGGTCATCGAAGCGGCC
GAACAATATGGCATCGATGTCGAGGATGGGACAGTCATCTTACGTCGAGACCTACATAGTAGCGGGAAGAGCGTCTGCCG
TGTGAACGGAAAAATGATGCCGCTCTCGACGTTACGGGAGTTCGGGCGGCTCCTTGTCGATATTCACGGTCAACATGAAC
ATCAACATTTAATGGATGCAGAATTTCACCTTGGCATATTGGACCATTTCGCCGAAAAAGAAATCAGTCCGTTAGTAGAG
GAATATCAAACAGCATATGCTGCCTGGAAACAAGTCGCAGATGAATTGAAACGTCTCAGTCAAAGTGAGCAGGAGCTTGC
TCAACGAATGGATCTTTTGTCGTTTCAAACGAAAGAAATCGAGGCGGCTGAATTAAAAGTTGGTGAAGAACAGGCGTTGA
CAGAAGAGCGAGATGAATTGGCCAACTTTGAACGTATTCATCAACACATTCGTCTCTCCTATGAGGCGGTTGCCGAGGAG
TCAAATGGACTCGATCAAATTGGAGTGGCAATGCGTGAGATGGAAGAAGCGTCACAGCTCTCATCGTCTTTGTCGTCTGT
ATCGGAAACCATCTCTAACGCTTATTATTTGTTAGAAGATGCCAAGTTCCAACTGCGCGACCAGTTGGATTCGCTCGAAT
TCGACCCGATCCGATTGGATGAAATCGAGTCAAGATTGGCTCTTTTCCAGCAACTGAAACGAAAGTATGGGACGACGATC
GAAGAAGTCATCACCTATGGCGAACAAGTATCGGATGAATTGAAGTCGATGACGAACCGGGAAGAGCATTTACAGACGCT
TTCAGATGAGCTCATACGATTAGAGCAGATTGCAAGAGATGCTGGTATGAGACTCTCTTCAGCGCGTAAGGTGGCTGCGG
AGTCGCTTCAGCATGCGATTCATCGAGAACTGAAAGAACTATACATGGAAAAAACAGCGTTCGAGGTCCGTTTCAAAACC
ACATCGCTTAAACAAGATGGTTTAGATGACGTGGAGTTTTACATGATGACGAACGTTGGAGAACCGTTCAAGCCGCTCGC
AAAAGTCGCTTCAGGAGGTGAGCTTTCCCGTGTCATGCTCGCACTCAAATCCATCTTTTCAAGAACGGTCGGCGTGGCCT
CCATTATTTTTGACGAGGTCGACACAGGAGTCTCTGGACGTGTCGCGCAGGCGATGGGTGAAAAAATCTTCCGACTTTCT
GTCGGCTCTCAAGTCCTCTGTATCACGCACTTGGCACAAGTTGCTGCGATGGCAGACCAACATCTTTACATTACGAAAAC
CGAAACGAACGAGCGGACGAAAACGAATGTGACGTCCCTCGACCGCGAAAGCCGAATCGACGAATTGGGTCGCATGATTG
CTGGCGCTCAAATGACAGACTTGACGAAGCAACACGTCGAAGAATTACTTGAGATGTCACAGCAAGTAAAACAGAAGTTC
ATCAAAGGAGTGTCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.819

100

0.549

Multiple sequence alignment