Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ETL60_RS16505 Genome accession   NZ_CP035414
Coordinates   3054109..3054753 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103637     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3049109..3059753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL60_RS16470 (ETL60_16470) mrpB 3050301..3050732 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ETL60_RS16475 (ETL60_16475) mrpC 3050732..3051073 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ETL60_RS16480 (ETL60_16480) mrpD 3051066..3052547 (+) 1482 WP_046160793.1 Na+/H+ antiporter subunit D -
  ETL60_RS16485 (ETL60_16485) mrpE 3052553..3053029 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  ETL60_RS16490 (ETL60_16490) mrpF 3053029..3053313 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ETL60_RS16495 (ETL60_16495) mnhG 3053297..3053671 (+) 375 WP_041332992.1 monovalent cation/H(+) antiporter subunit G -
  ETL60_RS16500 (ETL60_16500) yuxO 3053710..3054090 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  ETL60_RS16505 (ETL60_16505) comA 3054109..3054753 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ETL60_RS16510 (ETL60_16510) comP 3054834..3057131 (-) 2298 WP_087614687.1 histidine kinase Regulator
  ETL60_RS16515 (ETL60_16515) comX 3057139..3057300 (-) 162 WP_003241045.1 competence pheromone ComX -
  ETL60_RS16520 (ETL60_16520) - 3057315..3058175 (-) 861 WP_046160795.1 polyprenyl synthetase family protein -
  ETL60_RS16525 (ETL60_16525) degQ 3058359..3058499 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ETL60_RS16530 (ETL60_16530) - 3058721..3058846 (+) 126 WP_003228793.1 hypothetical protein -
  ETL60_RS16535 (ETL60_16535) - 3058961..3059329 (+) 369 WP_046381300.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=340897 ETL60_RS16505 WP_003220716.1 3054109..3054753(-) (comA) [Bacillus subtilis strain SRCM103637]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=340897 ETL60_RS16505 WP_003220716.1 3054109..3054753(-) (comA) [Bacillus subtilis strain SRCM103637]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment