Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   F5K02_RS14560 Genome accession   NZ_CP044132
Coordinates   2945532..2947304 (-) Length   590 a.a.
NCBI ID   WP_015417948.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2940532..2952304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS14540 (F5K02_14610) sdhA 2940744..2942504 (-) 1761 WP_003152573.1 succinate dehydrogenase flavoprotein subunit -
  F5K02_RS14545 (F5K02_14615) sdhC 2942538..2943146 (-) 609 WP_003152571.1 succinate dehydrogenase cytochrome B558 -
  F5K02_RS14550 (F5K02_14620) - 2943443..2943889 (+) 447 WP_007612940.1 YslB family protein -
  F5K02_RS14555 (F5K02_14625) - 2943936..2945165 (-) 1230 WP_025285071.1 aspartate kinase -
  F5K02_RS14560 (F5K02_14635) uvrC 2945532..2947304 (-) 1773 WP_015417948.1 excinuclease ABC subunit UvrC Machinery gene
  F5K02_RS14565 (F5K02_14640) trxA 2947446..2947760 (-) 315 WP_003152560.1 thioredoxin -
  F5K02_RS14570 (F5K02_14645) - 2947914..2949404 (-) 1491 WP_241457595.1 alpha-N-arabinofuranosidase -
  F5K02_RS14575 (F5K02_14650) - 2949618..2950595 (-) 978 WP_015417950.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  F5K02_RS14580 (F5K02_14655) - 2950627..2951400 (-) 774 WP_007408121.1 electron transfer flavoprotein subunit beta/FixA family protein -
  F5K02_RS14585 (F5K02_14660) - 2951414..2952193 (-) 780 WP_015417952.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68328.23 Da        Isoelectric Point: 9.6173

>NTDB_id=340835 F5K02_RS14560 WP_015417948.1 2945532..2947304(-) (uvrC) [Bacillus amyloliquefaciens strain ZKY01]
MNKQLKEKLALLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNREIVEDITRFLKGGHNEIKKELEAKMAEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDRDMITEL
LETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERDEERSIGAAERLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVLENELGLDVPVAGLA
KDDKHRTSNLLIGDPLEPVFLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQLLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=340835 F5K02_RS14560 WP_015417948.1 2945532..2947304(-) (uvrC) [Bacillus amyloliquefaciens strain ZKY01]
ATGAATAAACAACTGAAAGAAAAACTGGCCCTCCTTCCCGATCAGCCGGGCTGTTATTTAATGAAAGACCGTCAAAAAAC
AGTCATCTACGTGGGGAAAGCGAAAGTCTTGAAAAACAGGGTGCGATCTTATTTCACCGGTTCTCACGACGCAAAAACCC
AACGGCTTGTGACGGAGATTGAGGACTTTGAATATATCGTGACTTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGATAAAACCTATCCCTTTATTAAAATCACCCATGA
ACGCCATCCGCGGCTGATTGTCACCCGGAATGTCAAAAAAGACAAAGGACGCTATTTCGGCCCGTATCCGAATGTGCAGG
CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTTTACCCGCTCAGGAAATGCTCAAAGCTTCCGGACCGCGTCTGTCTC
TATTATCATCTCGGACAATGCCTTGCCCCATGTGTAAAGGATATATCTGAGGAGACAAACCGTGAGATTGTTGAAGACAT
TACCCGTTTTTTAAAGGGAGGGCATAACGAAATCAAAAAAGAGCTCGAAGCGAAAATGGCAGAAGCGGCGGAAAAGCTTG
AATTTGAACGGGCTAAAGAATTCCGCGACCAGCTTGCTCACATCGAATCGACGATGGAGAAGCAAAAAATGACCATGAAT
GACCTTCTGGACCGCGATGTGTTTGCATATGCCTACGATAAAGGCTGGATGTGCGTCCAAGTCTTTTTCATACGCCAAGG
AAAACTGATCGAACGTGACGTCAGCATGTTTCCGATGTATCAGGAAGCGGATGAAGAATTTCTGACCTTCATCGGCCAGT
TCTACTCTAAAAACAATCACTTTCTGCCTAAGGAAATTCTGGTGCCTGACAGCGTTGACAGGGACATGATCACCGAGCTG
TTGGAAACCGCCGTGCATCAGCCGAAAAAAGGCCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGC
CCTGCGGGAAAAATTTTCGTTAATCGAGCGGGATGAGGAACGGTCAATCGGTGCAGCCGAACGGCTCGGCGAAGCGCTGA
ATATTTACACGCCGCATCGGATTGAAGCGTTTGACAACTCCAATATTCAAGGCACAAACCCCGTATCGGCCATGATTGTC
TTTATTGACGGAAAACCGAATAAAAAGGAATACCGCAAATATAAAATTAAAACCGTAACAGGGCCGGATGATTACGGCTC
AATGAGGGAAGTCGTCAGAAGAAGGTACACGAGGGTGCTTCGCGAAAATCTTCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGGCAGATTAACGCGGCGCGCGACGTGCTCGAGAATGAGCTCGGCCTTGATGTCCCGGTAGCGGGATTGGCG
AAAGATGATAAACATCGGACATCCAACCTTTTGATCGGCGACCCGCTTGAACCGGTGTTTCTGGAGCGAAACAGCCAAGA
GTTTTACCTGCTTCAGCGCATTCAGGACGAAGTTCACCGTTTTGCGATCAGCTTTCACAGACAGATCCGGGGAAAAAGCG
CCTTTCAATCCGTTCTGGATGATATCCCCGGAATCGGCGAAAAACGCAAAAAAATGCTCTTAAAACATTTCGGATCTGTC
AAAAAGATGAAGGAAGCAAGCCTTGACGATATCAAAAAAGCGGGTGTGCCGGCCGCGGCGGCCCAGCTGCTGTTTGAAAA
ATTAAAAAAATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

UvrB/uvrC motif (UVR)

(198-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.694

99.661

0.595
  uvrC Streptococcus pneumoniae R6

59.354

99.661

0.592
  uvrC Streptococcus pneumoniae D39

59.354

99.661

0.592

Multiple sequence alignment