Detailed information NTG0340833

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: F5K02_RS14400
• Genome accession: NZ_CP044132
• Coordinates: 2912545..2913807 (-)
• Length: 420 a.a.
• NCBI ID: WP_007408149.1
• Uniprot ID: A7Z7B2
• Organism: Bacillus amyloliquefaciens strain ZKY01
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2907545..2918807

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F5K02_RS14385 (F5K02_14455)	yihA	2907629..2908216 (-)	588	WP_007612895.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
F5K02_RS14390 (F5K02_14460)	lon	2908213..2910537 (-)	2325	WP_064115682.1	endopeptidase La	-
F5K02_RS14395 (F5K02_14465)	lonB	2910737..2912395 (-)	1659	WP_012118116.1	ATP-dependent protease LonB	-
F5K02_RS14400 (F5K02_14470)	clpX	2912545..2913807 (-)	1263	WP_007408149.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
F5K02_RS14405 (F5K02_14475)	tig	2914079..2915353 (-)	1275	WP_241457591.1	trigger factor	-
F5K02_RS14410 (F5K02_14480)	ddcA	2915570..2916574 (-)	1005	WP_059368019.1	DNA damage checkpoint antagonist DdcA	-
F5K02_RS14415 (F5K02_14485)	leuD	2916692..2917291 (-)	600	WP_007408146.1	3-isopropylmalate dehydratase small subunit	-
F5K02_RS14420 (F5K02_14490)	leuC	2917307..2918725 (-)	1419	WP_003152606.1	3-isopropylmalate dehydratase large subunit	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46247.01 Da
• Isoelectric Point: 4.4911

>NTDB_id=340833 F5K02_RS14400 WP_007408149.1 2912545..2913807(-) (clpX) [Bacillus amyloliquefaciens strain ZKY01]
MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQ
AKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEQIIKRRLGQKVIGFGSDNKAADLEKEELLSKVLPEDLLRFGLIPEFIGRLPVIASLEQLDETALVEIL
TKPKNALVKQYKKMLELDDVELEFEDEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADG
EAPRLVLKDGTVVGQDKTSA

Nucleotide

• Length: 1263 bp

>NTDB_id=340833 F5K02_RS14400 WP_007408149.1 2912545..2913807(-) (clpX) [Bacillus amyloliquefaciens strain ZKY01]
ATGTTTAAATTCAACGAGGAAAAAGGACAATTGAAATGCTCGTTCTGCGGAAAAACGCAAGATCAGGTTCGTAAGCTGGT
TGCAGGACCGGGTGTATATATATGCGACGAATGTATTGAGCTCTGTACAGAAATCGTAGAGGAAGAGCTTGGTACAGAAG
AAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAATCCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAG
GCGAAGAAATCACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAACTCCAACAGTAAAGTGGATGATGTCGAGCT
TTCTAAAAGTAATATTTCTTTAATCGGACCGACTGGGAGCGGGAAAACACTTCTTGCCCAGACGCTTGCGCGTATTCTGA
ACGTGCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATATGTCGGTGAGGACGTAGAAAACATCCTCCTC
AAGCTGATTCAGGCAGCAGACTATGATGTGGAAAAGGCAGAAAAAGGCATTATTTATATCGATGAAATCGATAAAGTAGC
GCGAAAATCTGAAAACCCGTCCATTACACGCGACGTATCAGGCGAAGGCGTTCAGCAGGCGCTGCTGAAAATTCTTGAAG
GAACGGTTGCAAGCGTGCCGCCTCAAGGAGGACGTAAACATCCTCATCAGGAATTCATCCAGATCGATACGACGAACATC
CTGTTCATTTGCGGCGGTGCATTTGACGGCATCGAACAAATCATCAAACGCCGTCTCGGACAAAAAGTCATCGGCTTCGG
CTCAGATAATAAAGCGGCAGACCTTGAAAAAGAAGAACTGCTTTCTAAAGTTCTTCCGGAAGACTTGCTCCGTTTCGGTC
TGATTCCTGAATTCATCGGCCGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGTTGAAATTCTG
ACTAAACCGAAAAACGCACTCGTCAAACAATACAAGAAAATGTTAGAACTTGATGATGTCGAGCTTGAATTTGAAGACGA
GGCATTATCTGAAATTGCGAAAAAAGCGATCGAGCGTAAAACAGGCGCACGCGGCCTGCGTTCTATCATTGAAGGCATCA
TGCTTGACGTCATGTTTGATCTGCCGTCCCGCGATGATATTGAAAAATGTGTCATTACCGGAGCGACAGTCGCAGACGGT
GAAGCACCGCGTCTTGTATTAAAAGACGGCACAGTTGTCGGCCAAGATAAAACATCAGCATAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

3D structure

• AlphaFold DB: A7Z7B2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	68.262	94.524	0.645
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.158	96.19	0.569