Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SGPB_RS02910 Genome accession   NC_015600
Coordinates   544283..544879 (+) Length   198 a.a.
NCBI ID   WP_012961653.1    Uniprot ID   F5X5E6
Organism   Streptococcus pasteurianus ATCC 43144     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 539283..549879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS11275 (SGPB_0519) - 539318..539482 (-) 165 WP_231844750.1 hypothetical protein -
  SGPB_RS11280 (SGPB_0520) - 539510..539722 (-) 213 WP_231844751.1 DUF3267 domain-containing protein -
  SGPB_RS02895 (SGPB_0521) - 540134..540655 (+) 522 WP_003063789.1 transcription repressor NadR -
  SGPB_RS02900 (SGPB_0522) - 540852..541406 (+) 555 WP_013851590.1 hypothetical protein -
  SGPB_RS02905 (SGPB_0523) pbp2b 542091..544217 (+) 2127 WP_013851591.1 penicillin-binding protein PBP2B -
  SGPB_RS02910 (SGPB_0524) recR 544283..544879 (+) 597 WP_012961653.1 recombination mediator RecR Machinery gene
  SGPB_RS02915 (SGPB_0525) - 544981..545484 (+) 504 WP_013851592.1 MarR family winged helix-turn-helix transcriptional regulator -
  SGPB_RS02920 (SGPB_0526) - 545462..546694 (+) 1233 WP_051764151.1 acyl-CoA thioester hydrolase/BAAT C-terminal domain-containing protein -
  SGPB_RS02925 (SGPB_0527) - 546925..547971 (+) 1047 WP_009853758.1 D-alanine--D-alanine ligase -
  SGPB_RS02930 (SGPB_0528) - 548073..548633 (-) 561 WP_013851594.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21726.89 Da        Isoelectric Point: 4.5286

>NTDB_id=34081 SGPB_RS02910 WP_012961653.1 544283..544879(+) (recR) [Streptococcus pasteurianus ATCC 43144]
MLYPTPIAKLIDSFTKLPGIGIKTATRLAFYTIGMSDEDVNEFAKNLLAAKRELTYCSVCGNLTDEDPCNICTDETRDRS
VILVVEDSKDVSAMEKIQEYHGLYHVLHGLISPMNGVGPDDINLKSLITRLMDSEVNEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=34081 SGPB_RS02910 WP_012961653.1 544283..544879(+) (recR) [Streptococcus pasteurianus ATCC 43144]
ATGCTTTATCCAACGCCTATCGCAAAGCTGATTGATAGTTTTACAAAATTACCAGGAATTGGTATAAAAACAGCAACACG
TTTGGCTTTCTACACGATTGGAATGTCAGATGAAGATGTGAATGAATTCGCCAAAAATTTATTGGCAGCTAAGCGTGAAT
TGACTTATTGTTCCGTTTGTGGGAATTTAACAGATGAAGACCCTTGTAATATCTGTACAGATGAAACTCGTGACCGTTCC
GTTATTTTAGTGGTTGAAGATTCAAAAGACGTATCTGCCATGGAAAAAATTCAAGAGTATCATGGCTTGTACCATGTCTT
GCATGGCTTGATTTCACCAATGAACGGTGTCGGACCAGATGATATTAATTTGAAATCATTGATTACACGTTTAATGGATA
GTGAGGTCAATGAAGTGATTATTGCAACCAATGCAACCGCAGACGGTGAAGCAACATCTATGTATATCTCACGTGTCCTA
AAACCAGCAGGAATCAAGGTAACACGTTTAGCACGTGGACTGGCTGTTGGCTCAGACATCGAATACGCCGACGAAGTCAC
CCTACTTCGTGCCATAGAAAACCGAACAGAATTGTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5X5E6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

65.152

100

0.652
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475

Multiple sequence alignment