Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   F5K02_RS06680 Genome accession   NZ_CP044132
Coordinates   1299651..1300322 (+) Length   223 a.a.
NCBI ID   WP_060561818.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1294651..1305322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS06665 (F5K02_06715) - 1295457..1296455 (+) 999 WP_007407297.1 LacI family DNA-binding transcriptional regulator -
  F5K02_RS06670 (F5K02_06720) - 1296531..1297976 (+) 1446 WP_094032364.1 tagaturonate reductase -
  F5K02_RS06675 (F5K02_06725) - 1297973..1299466 (+) 1494 WP_094032365.1 altronate dehydratase family protein -
  F5K02_RS06680 (F5K02_06730) scnR 1299651..1300322 (+) 672 WP_060561818.1 response regulator transcription factor Regulator
  F5K02_RS06685 (F5K02_06735) - 1300319..1301677 (+) 1359 WP_064116089.1 HAMP domain-containing sensor histidine kinase -
  F5K02_RS06690 (F5K02_06740) - 1301790..1301885 (+) 96 WP_225649673.1 ATP-binding cassette domain-containing protein -
  F5K02_RS06695 (F5K02_06745) - 1302027..1302218 (+) 192 WP_015417277.1 hypothetical protein -
  F5K02_RS06700 (F5K02_06750) - 1302292..1303056 (-) 765 WP_007610763.1 sulfite exporter TauE/SafE family protein -
  F5K02_RS06705 (F5K02_06755) - 1303201..1303668 (-) 468 WP_144464017.1 DinB family protein -
  F5K02_RS06710 (F5K02_06760) rapC 1303874..1305010 (+) 1137 WP_087920760.1 Rap family tetratricopeptide repeat protein Regulator
  F5K02_RS06715 (F5K02_06765) - 1305000..1305134 (+) 135 WP_003154881.1 PhrA family phosphatase inhibitor -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 26440.72 Da        Isoelectric Point: 6.5038

>NTDB_id=340776 F5K02_RS06680 WP_060561818.1 1299651..1300322(+) (scnR) [Bacillus amyloliquefaciens strain ZKY01]
MNNILYIEDDQEIGQFVKDDLEDRGYMMIWLTSSYNYETYIEKADLIVLDIMMPGLDGFTIGQRMKKTHPQIPLLLLTAR
TGLEDKLKGLGFADDYVTKPFHPDELAARIEVLLRRFDKTAIHELKLKHLSVHLKEKRILNHQSHEEIFLTDKQLRIFLL
LLRHPNQILTKEQIYENIWEQPYIEGDKTLMVHIRHLRQKIEINPNEPEILETIRGIGYRIKQ

Nucleotide


Download         Length: 672 bp        

>NTDB_id=340776 F5K02_RS06680 WP_060561818.1 1299651..1300322(+) (scnR) [Bacillus amyloliquefaciens strain ZKY01]
ATGAATAACATTTTATACATTGAAGATGATCAAGAAATTGGCCAATTTGTAAAGGATGACTTAGAAGATCGGGGCTATAT
GATGATCTGGCTCACTTCTTCGTATAATTACGAAACATATATAGAAAAGGCAGATCTGATCGTGCTTGATATTATGATGC
CCGGTTTAGATGGATTTACAATCGGTCAAAGGATGAAAAAAACACATCCGCAGATCCCGCTCTTGCTTTTAACAGCCAGA
ACGGGTCTGGAAGATAAGCTGAAAGGCTTAGGATTTGCGGATGATTACGTGACAAAGCCCTTTCATCCCGATGAACTGGC
TGCTCGAATCGAAGTATTATTAAGAAGATTTGACAAGACTGCCATTCATGAATTGAAGCTGAAACACTTAAGTGTTCACT
TGAAAGAAAAAAGAATTTTAAATCATCAAAGTCATGAGGAAATATTTTTAACTGATAAGCAGTTAAGGATTTTTTTGCTT
TTGCTTAGACATCCCAATCAAATATTAACAAAGGAACAAATTTATGAAAATATTTGGGAACAGCCTTATATCGAAGGGGA
TAAGACGTTGATGGTACATATCCGGCATTTACGGCAAAAAATCGAGATCAATCCAAATGAGCCGGAAATTCTTGAAACAA
TCAGGGGGATTGGATACAGGATCAAACAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36

100

0.363

Multiple sequence alignment