Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ETL58_RS02060 Genome accession   NZ_CP035413
Coordinates   374140..374589 (-) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis strain SRCM103629     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 369140..379589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL58_RS02025 (ETL58_02025) yckA 369412..370092 (-) 681 WP_024572176.1 amino acid ABC transporter permease -
  ETL58_RS02030 (ETL58_02030) yckB 370102..370965 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  ETL58_RS02035 (ETL58_02035) - 371127..371323 (+) 197 Protein_353 hypothetical protein -
  ETL58_RS02040 (ETL58_02040) - 371363..371677 (+) 315 Protein_354 RDD family protein -
  ETL58_RS02045 (ETL58_02045) yckD 371759..372091 (+) 333 WP_003246247.1 YckD family protein -
  ETL58_RS02050 (ETL58_02050) bglC 372245..373678 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  ETL58_RS02055 (ETL58_02055) nin/comJ 373715..374113 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  ETL58_RS02060 (ETL58_02060) nucA/comI 374140..374589 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  ETL58_RS02065 (ETL58_02065) tlpC 374757..376478 (-) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  ETL58_RS02070 (ETL58_02070) hxlB 376589..377146 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  ETL58_RS02075 (ETL58_02075) hxlA 377152..377784 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  ETL58_RS02080 (ETL58_02080) hxlR 378017..378379 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=340764 ETL58_RS02060 WP_003246436.1 374140..374589(-) (nucA/comI) [Bacillus subtilis strain SRCM103629]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=340764 ETL58_RS02060 WP_003246436.1 374140..374589(-) (nucA/comI) [Bacillus subtilis strain SRCM103629]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment