Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FOB62_RS08810 Genome accession   NZ_CP044102
Coordinates   1752029..1752625 (+) Length   198 a.a.
NCBI ID   WP_014612440.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_654     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1747029..1757625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB62_RS08790 (FOB62_08795) - 1747794..1748315 (+) 522 WP_003053932.1 transcription repressor NadR -
  FOB62_RS08795 (FOB62_08800) - 1748417..1748959 (+) 543 WP_003053939.1 hypothetical protein -
  FOB62_RS08800 (FOB62_08805) - 1749086..1749856 (+) 771 WP_003053941.1 formate/nitrite transporter family protein -
  FOB62_RS08805 (FOB62_08810) pbp2b 1749963..1752017 (+) 2055 WP_014612441.1 penicillin-binding protein PBP2B -
  FOB62_RS08810 (FOB62_08815) recR 1752029..1752625 (+) 597 WP_014612440.1 recombination mediator RecR Machinery gene
  FOB62_RS08815 (FOB62_08820) - 1752797..1753843 (+) 1047 WP_003060500.1 D-alanine--D-alanine ligase -
  FOB62_RS08820 (FOB62_08825) murF 1754049..1755416 (+) 1368 WP_014612439.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  FOB62_RS08825 (FOB62_08830) - 1755520..1756215 (+) 696 WP_003057977.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21613.77 Da        Isoelectric Point: 4.7577

>NTDB_id=340618 FOB62_RS08810 WP_014612440.1 1752029..1752625(+) (recR) [Streptococcus dysgalactiae strain FDAARGOS_654]
MFYPTPIAKLIESYSKLPGIGVKTATRLAFYTIGMSDEAVNDFAKNLLAAKRELTYCSICGNLTDDDPCSICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVTEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=340618 FOB62_RS08810 WP_014612440.1 1752029..1752625(+) (recR) [Streptococcus dysgalactiae strain FDAARGOS_654]
GTGTTTTACCCAACCCCTATTGCAAAATTAATCGAAAGTTATTCCAAGCTCCCAGGAATTGGGGTAAAAACGGCAACTAG
ACTTGCCTTTTACACAATTGGAATGTCTGACGAGGCTGTCAATGACTTTGCTAAAAATTTATTGGCAGCTAAAAGAGAAT
TAACCTATTGTTCCATTTGTGGCAACCTGACAGATGATGATCCTTGTTCTATCTGCACAGATACAAGTCGTGACCAGACA
ACGATTCTTGTGGTGGAAGATGCTAAAGATGTTTCTGCTATGGAAAAAATTCAAGAGTATCATGGTTATTACCATGTGCT
GCATGGTTTAATTTCACCGATGAATGGTGTTGGTCCGGATGATATCAATCTAAAAAGTTTAATTACTCGTTTAATGGACG
GTAAAGTGACTGAAGTTATCATAGCGACCAATGCCACAGCTGATGGCGAAGCAACATCTATGTATATCTCACGGGTCTTG
AAACCAGCAGGAATCAAAGTTACCCGCTTAGCAAGAGGGCTCGCAGTGGGGTCAGATATTGAATACGCAGATGAAGTCAC
CTTGTTAAGAGCTATTGAAAACCGCACAGAACTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.364

100

0.864
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495

Multiple sequence alignment