Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ETK49_RS19530 Genome accession   NZ_CP035405
Coordinates   3704920..3706314 (-) Length   464 a.a.
NCBI ID   WP_059260886.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM103608     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3699920..3711314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK49_RS19495 (ETK49_19495) flgL 3700110..3701021 (-) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  ETK49_RS19500 (ETK49_19500) flgK 3701032..3702555 (-) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  ETK49_RS19505 (ETK49_19505) - 3702571..3703047 (-) 477 WP_003185711.1 flagellar protein FlgN -
  ETK49_RS19510 (ETK49_19510) flgM 3703066..3703332 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  ETK49_RS19515 (ETK49_19515) - 3703412..3703831 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  ETK49_RS19520 (ETK49_19520) comFC 3703890..3704624 (-) 735 WP_128993911.1 double zinc ribbon domain-containing protein Machinery gene
  ETK49_RS19525 (ETK49_19525) - 3704581..3704865 (-) 285 WP_003185718.1 competence protein ComFB -
  ETK49_RS19530 (ETK49_19530) comFA 3704920..3706314 (-) 1395 WP_059260886.1 DEAD/DEAH box helicase Machinery gene
  ETK49_RS19535 (ETK49_19535) - 3706437..3707279 (-) 843 WP_003185726.1 DegV family protein -
  ETK49_RS19540 (ETK49_19540) degU 3707399..3708088 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  ETK49_RS19545 (ETK49_19545) degS 3708170..3709327 (-) 1158 WP_003185733.1 histidine kinase Regulator
  ETK49_RS19550 (ETK49_19550) - 3709541..3710179 (+) 639 WP_128993912.1 YigZ family protein -
  ETK49_RS19555 (ETK49_19555) - 3710194..3711270 (+) 1077 WP_003185737.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52906.53 Da        Isoelectric Point: 9.8972

>NTDB_id=340511 ETK49_RS19530 WP_059260886.1 3704920..3706314(-) (comFA) [Bacillus licheniformis strain SRCM103608]
MIHIEQPAFYTRELRSCLEQRHLLKSELPFRESVVDWHIQEGLIKTEEGIKKTKKGFICLRCGQHERSFFARYPCYRCSK
CCVYCRSCVMMGRVSDCTPLLTWHMHVSHKWAPVHTEWKGALSAGQEKAAKSIINAIRRKEELLVWAVCGSGKTELLFQG
IEFALNNGLTVCIATPRTDVVLELAPRFRQAFPGVEIAALYGGSSDVGNLSPLIISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSADMKKRAESGKLDTVRIPARFHRSPLPEPTLIWCGNWKKSLKRRKVPFRLK
KWLFKHQELQQPVFLFVPSVPVLKSVVSVLKKETFRAEGVYADDPDRNEKVNRFRESKLEVLVTTTILERGVTVKKAQVG
VLGAESAVFTESALVQMAGRAGRHPEHTDGDVCFFHYGRTKSMNEARRHIQNMNKMSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=340511 ETK49_RS19530 WP_059260886.1 3704920..3706314(-) (comFA) [Bacillus licheniformis strain SRCM103608]
GTGATTCACATCGAACAACCGGCATTCTATACCCGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCGTGAATCCGTCGTTGATTGGCATATCCAAGAAGGCTTGATAAAAACGGAGGAAGGTATTAAAAAAACGA
AGAAAGGCTTTATTTGTTTGAGGTGCGGCCAGCACGAACGCTCATTTTTCGCCCGGTATCCTTGCTATCGGTGCAGTAAA
TGCTGCGTGTACTGCCGATCCTGCGTCATGATGGGCAGGGTGAGCGATTGTACGCCTCTGTTGACTTGGCACATGCATGT
CAGCCATAAATGGGCGCCTGTTCATACGGAGTGGAAAGGCGCGCTTTCAGCAGGTCAGGAGAAAGCGGCCAAATCCATTA
TCAATGCTATACGAAGAAAAGAAGAACTGTTGGTCTGGGCGGTTTGCGGGTCGGGGAAAACAGAACTTCTCTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGCTTGACAGTATGTATCGCTACTCCGAGAACCGATGTCGTACTCGAGCTTGCTCCGCG
GTTTCGCCAAGCCTTTCCAGGGGTGGAAATTGCCGCTTTGTACGGAGGAAGCTCAGACGTTGGGAATCTCTCGCCGCTTA
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAGGTGGATGCTTTTCCG
TATTCTATTGATAACACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCTCACATCTATTTAACTGCCAC
GCCTTCAGCAGATATGAAAAAAAGGGCTGAGAGCGGAAAGCTGGACACCGTCCGTATTCCCGCGAGATTCCACCGCAGCC
CCTTGCCTGAGCCTACATTGATTTGGTGCGGAAATTGGAAAAAGAGTTTGAAACGAAGAAAAGTTCCTTTTCGCCTCAAA
AAATGGCTTTTTAAGCACCAAGAACTGCAGCAACCGGTTTTTTTATTCGTTCCCTCTGTCCCTGTTCTTAAATCTGTGGT
CAGTGTGCTGAAAAAGGAAACATTTCGCGCTGAAGGAGTTTATGCCGATGACCCTGACAGAAATGAAAAAGTGAACCGGT
TTAGGGAAAGTAAGCTTGAGGTGCTCGTGACAACAACGATTTTGGAAAGAGGAGTGACCGTCAAAAAAGCGCAGGTTGGA
GTATTGGGGGCAGAGTCGGCGGTTTTTACCGAAAGCGCCCTCGTCCAAATGGCGGGAAGAGCCGGCAGGCATCCCGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATTACGGCAGGACAAAGTCGATGAATGAGGCACGACGTCATATTCAAAACATGA
ATAAAATGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(122-269)

Helicase conserved C-terminal domain (Helicase_C)

(323-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.332

98.707

0.556

Multiple sequence alignment