Detailed information    

insolico Bioinformatically predicted

Overview


Name   comFC/cflB   Type   Machinery gene
Locus tag   FOB76_RS07060 Genome accession   NZ_CP044093
Coordinates   1356467..1357132 (+) Length   221 a.a.
NCBI ID   WP_002983685.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain FDAARGOS_668     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1351467..1362132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB76_RS07035 (FOB76_07035) - 1351619..1353019 (+) 1401 WP_002983672.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  FOB76_RS07040 (FOB76_07040) - 1353019..1353396 (+) 378 WP_002983674.1 S1 RNA-binding domain-containing protein -
  FOB76_RS07045 (FOB76_07045) cysK 1353414..1354355 (-) 942 WP_002988967.1 cysteine synthase A -
  FOB76_RS07050 (FOB76_07050) - 1354483..1355115 (-) 633 WP_002988970.1 YigZ family protein -
  FOB76_RS07055 (FOB76_07055) comFA/cflA 1355170..1356495 (+) 1326 WP_002988971.1 DEAD/DEAH box helicase Machinery gene
  FOB76_RS07060 (FOB76_07060) comFC/cflB 1356467..1357132 (+) 666 WP_002983685.1 ComF family protein Machinery gene
  FOB76_RS07065 (FOB76_07065) hpf 1357212..1357760 (+) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence


Protein


Download         Length: 221 a.a.        Molecular weight: 25163.41 Da        Isoelectric Point: 9.4626

>NTDB_id=340511 FOB76_RS07060 WP_002983685.1 1356467..1357132(+) (comFC/cflB) [Streptococcus pyogenes strain FDAARGOS_668]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=340511 FOB76_RS07060 WP_002983685.1 1356467..1357132(+) (comFC/cflB) [Streptococcus pyogenes strain FDAARGOS_668]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416

  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416

  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416

  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416

  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416

  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412


Multiple sequence alignment