Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ETK49_RS19520 Genome accession   NZ_CP035405
Coordinates   3703890..3704624 (-) Length   244 a.a.
NCBI ID   WP_128993911.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM103608     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3698890..3709624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK49_RS19485 (ETK49_19485) fliW 3699041..3699472 (-) 432 WP_025807162.1 flagellar assembly protein FliW -
  ETK49_RS19490 (ETK49_19490) - 3699494..3700060 (-) 567 WP_003185702.1 DUF6470 family protein -
  ETK49_RS19495 (ETK49_19495) flgL 3700110..3701021 (-) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  ETK49_RS19500 (ETK49_19500) flgK 3701032..3702555 (-) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  ETK49_RS19505 (ETK49_19505) - 3702571..3703047 (-) 477 WP_003185711.1 flagellar protein FlgN -
  ETK49_RS19510 (ETK49_19510) flgM 3703066..3703332 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  ETK49_RS19515 (ETK49_19515) - 3703412..3703831 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  ETK49_RS19520 (ETK49_19520) comFC 3703890..3704624 (-) 735 WP_128993911.1 double zinc ribbon domain-containing protein Machinery gene
  ETK49_RS19525 (ETK49_19525) - 3704581..3704865 (-) 285 WP_003185718.1 competence protein ComFB -
  ETK49_RS19530 (ETK49_19530) comFA 3704920..3706314 (-) 1395 WP_059260886.1 DEAD/DEAH box helicase Machinery gene
  ETK49_RS19535 (ETK49_19535) - 3706437..3707279 (-) 843 WP_003185726.1 DegV family protein -
  ETK49_RS19540 (ETK49_19540) degU 3707399..3708088 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  ETK49_RS19545 (ETK49_19545) degS 3708170..3709327 (-) 1158 WP_003185733.1 histidine kinase Regulator

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27868.27 Da        Isoelectric Point: 9.6519

>NTDB_id=340510 ETK49_RS19520 WP_128993911.1 3703890..3704624(-) (comFC) [Bacillus licheniformis strain SRCM103608]
MKTRFAQAIEEGGNKLNCLICAAPLLHSLSWHSFFFLRSEEKICRECKENFIEIKGTVCPKCGRPQGSEELCGDCAKWEA
NPLTRSLLRQNRSVYLYNTFMKEVLARFKFRGDAELVFAFAPSFISAFQQYFRRSPSVLVPIPLSEERKAERGFNQAERL
ASLLQRPVIHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDVILIDELYTTGATLHHAADCLMTSGEAKSVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=340510 ETK49_RS19520 WP_128993911.1 3703890..3704624(-) (comFC) [Bacillus licheniformis strain SRCM103608]
ATGAAAACCCGCTTTGCGCAAGCAATCGAAGAGGGAGGGAATAAACTGAATTGTTTAATTTGTGCAGCGCCTCTTTTACA
TTCTCTCTCATGGCATTCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGAATGTAAAGAGAACTTTATCGAGA
TCAAAGGAACCGTATGCCCTAAGTGCGGACGGCCACAGGGGAGCGAAGAGCTGTGCGGTGACTGCGCAAAATGGGAGGCC
AATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTTTATCTCTACAATACTTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCCCCTTCATTTATCAGCGCTTTTCAACAATACTTCCGCC
GCAGCCCGTCTGTTTTAGTTCCGATACCTCTCAGTGAAGAACGTAAAGCGGAGAGGGGATTTAATCAGGCGGAGCGTCTT
GCTTCCTTATTACAAAGACCCGTTATTCATCCCTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGGAAAGA
GCGAATTAAGCCAAAAACCGTTTTTAGAACCGAAAAGGGGTCAGTAAAGAATCTGGATGTCATATTGATTGACGAATTGT
ATACGACAGGAGCGACCCTTCATCATGCCGCTGATTGCCTGATGACATCCGGAGAAGCAAAATCTGTATCATCATATACA
TTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.321

97.131

0.508

Multiple sequence alignment