Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ETA57_RS20150 Genome accession   NZ_CP035404
Coordinates   3820789..3822183 (-) Length   464 a.a.
NCBI ID   WP_069500926.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM103583     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3815789..3827183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA57_RS20115 (ETA57_20115) flgL 3815979..3816890 (-) 912 WP_129093967.1 flagellar hook-associated protein FlgL -
  ETA57_RS20120 (ETA57_20120) flgK 3816901..3818424 (-) 1524 WP_129093968.1 flagellar hook-associated protein FlgK -
  ETA57_RS20125 (ETA57_20125) - 3818440..3818916 (-) 477 WP_003185711.1 flagellar protein FlgN -
  ETA57_RS20130 (ETA57_20130) flgM 3818935..3819201 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  ETA57_RS20135 (ETA57_20135) - 3819281..3819700 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  ETA57_RS20140 (ETA57_20140) comFC 3819759..3820493 (-) 735 WP_059260889.1 amidophosphoribosyltransferase Machinery gene
  ETA57_RS20145 (ETA57_20145) - 3820450..3820734 (-) 285 WP_003185718.1 competence protein ComFB -
  ETA57_RS20150 (ETA57_20150) comFA 3820789..3822183 (-) 1395 WP_069500926.1 DEAD/DEAH box helicase Machinery gene
  ETA57_RS20155 (ETA57_20155) - 3822306..3823148 (-) 843 WP_003185726.1 DegV family protein -
  ETA57_RS20160 (ETA57_20160) degU 3823268..3823957 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  ETA57_RS20165 (ETA57_20165) degS 3824039..3825196 (-) 1158 WP_003185733.1 histidine kinase Regulator
  ETA57_RS20170 (ETA57_20170) - 3825410..3826048 (+) 639 WP_003185736.1 YigZ family protein -
  ETA57_RS20175 (ETA57_20175) - 3826063..3827139 (+) 1077 WP_003185737.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52916.57 Da        Isoelectric Point: 9.8972

>NTDB_id=340437 ETA57_RS20150 WP_069500926.1 3820789..3822183(-) (comFA) [Bacillus licheniformis strain SRCM103583]
MIHIEQPAFYTRELRSCLEQRHLLKSELPFRESVVDWHIQEGLIKTEEGIKKTKKGFICLRCGQHERSFFARYPCYRCSK
CCVYCRSCVMMGRVSDCTPLLTWHMHVSHKWAPVHTEWKGALSAGQEKAAKSIINAIRRKEELLVWAVCGSGKTELLFQG
IEFALNNGLTVCIATPRTDVVLELAPRFRQAFPGVEIAALYGGSSDVGNLSPLIISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPPADMKKRAESGKLDTVRIPARFHRSPLPEPTLIWCGNWKKSLKRRKVPFRLK
KWLFKHQELQQPVFLFVPSVPVLKSVVSVLKKETFRAEGVYADDPDRNEKVNRFRESKLEVLVTTTILERGVTVKKAQVG
VLGAESAVFTESALVQMAGRAGRHPEHTDGDVCFFHYGRTKSMNEARRHIQNMNKMSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=340437 ETA57_RS20150 WP_069500926.1 3820789..3822183(-) (comFA) [Bacillus licheniformis strain SRCM103583]
GTGATTCACATCGAACAACCGGCATTCTATACCCGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCGTGAATCCGTCGTTGATTGGCATATCCAAGAAGGCTTGATAAAAACGGAGGAAGGTATTAAAAAAACGA
AGAAAGGCTTTATTTGTTTGAGGTGCGGCCAGCACGAACGCTCATTTTTCGCCCGGTATCCTTGCTATCGGTGCAGTAAA
TGCTGCGTGTACTGCCGATCCTGCGTCATGATGGGCAGGGTGAGCGATTGTACGCCTCTGTTGACTTGGCACATGCATGT
CAGCCATAAATGGGCGCCTGTTCATACGGAGTGGAAAGGCGCGCTTTCAGCAGGTCAGGAGAAAGCGGCCAAATCCATTA
TCAATGCTATACGAAGAAAAGAAGAACTGTTGGTCTGGGCGGTTTGCGGGTCGGGGAAAACAGAACTTCTCTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGCTTGACAGTATGTATCGCTACTCCGAGAACCGATGTCGTACTCGAGCTTGCTCCGCG
GTTTCGCCAAGCCTTTCCAGGGGTGGAAATTGCCGCTTTGTACGGAGGAAGCTCAGACGTTGGGAATCTCTCGCCGCTTA
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAGGTGGATGCTTTTCCG
TATTCTATTGATAACACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCTCACATCTATTTAACTGCCAC
GCCTCCAGCAGATATGAAAAAAAGGGCTGAGAGCGGAAAGCTGGACACCGTCCGTATTCCCGCGAGATTCCACCGCAGCC
CCTTGCCTGAGCCTACATTGATTTGGTGCGGAAATTGGAAAAAGAGTTTGAAACGAAGAAAAGTTCCTTTTCGCCTCAAA
AAATGGCTTTTTAAGCACCAAGAACTGCAGCAACCGGTTTTTTTATTCGTTCCCTCTGTCCCTGTTCTTAAATCTGTGGT
CAGTGTGCTGAAAAAGGAAACATTTCGCGCTGAAGGAGTTTATGCCGATGACCCTGACAGAAATGAAAAAGTGAACCGGT
TTAGGGAAAGTAAGCTTGAGGTGCTCGTGACAACAACGATTTTGGAAAGAGGAGTGACCGTCAAAAAAGCGCAGGTTGGA
GTATTGGGGGCAGAGTCGGCGGTTTTTACCGAAAGCGCCCTCGTCCAAATGGCGGGAAGAGCCGGCAGGCATCCCGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATTACGGCAGGACAAAGTCGATGAATGAGGCACGACGTCATATTCAAAACATGA
ATAAAATGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(323-424)

Type III restriction enzyme, res subunit (ResIII)

(122-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.55

98.707

0.558

Multiple sequence alignment