Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ETA57_RS20140 Genome accession   NZ_CP035404
Coordinates   3819759..3820493 (-) Length   244 a.a.
NCBI ID   WP_059260889.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM103583     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3814759..3825493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA57_RS20105 (ETA57_20105) fliW 3814910..3815341 (-) 432 WP_025807162.1 flagellar assembly protein FliW -
  ETA57_RS20110 (ETA57_20110) - 3815363..3815929 (-) 567 WP_003185702.1 DUF6470 family protein -
  ETA57_RS20115 (ETA57_20115) flgL 3815979..3816890 (-) 912 WP_129093967.1 flagellar hook-associated protein FlgL -
  ETA57_RS20120 (ETA57_20120) flgK 3816901..3818424 (-) 1524 WP_129093968.1 flagellar hook-associated protein FlgK -
  ETA57_RS20125 (ETA57_20125) - 3818440..3818916 (-) 477 WP_003185711.1 flagellar protein FlgN -
  ETA57_RS20130 (ETA57_20130) flgM 3818935..3819201 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  ETA57_RS20135 (ETA57_20135) - 3819281..3819700 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  ETA57_RS20140 (ETA57_20140) comFC 3819759..3820493 (-) 735 WP_059260889.1 amidophosphoribosyltransferase Machinery gene
  ETA57_RS20145 (ETA57_20145) - 3820450..3820734 (-) 285 WP_003185718.1 competence protein ComFB -
  ETA57_RS20150 (ETA57_20150) comFA 3820789..3822183 (-) 1395 WP_069500926.1 DEAD/DEAH box helicase Machinery gene
  ETA57_RS20155 (ETA57_20155) - 3822306..3823148 (-) 843 WP_003185726.1 DegV family protein -
  ETA57_RS20160 (ETA57_20160) degU 3823268..3823957 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  ETA57_RS20165 (ETA57_20165) degS 3824039..3825196 (-) 1158 WP_003185733.1 histidine kinase Regulator

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27854.24 Da        Isoelectric Point: 9.6519

>NTDB_id=340436 ETA57_RS20140 WP_059260889.1 3819759..3820493(-) (comFC) [Bacillus licheniformis strain SRCM103583]
MKTRFAQAIEEGGNKLNCLICAAPLLHSLSWHSFFFLRSEEKICRECKENFIEIKGTVCPKCGRPQGSEELCGDCAKWEA
NPLTRSLLRQNRSVYLYNTFMKEVLARFKFRGDAELVFAFAPSFISAFQQYFRRSPSVLVPIPLSEERKAERGFNQAERL
ASLLQRPVIHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDVILIDDLYTTGATLHHAADCLMTSGEAKSVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=340436 ETA57_RS20140 WP_059260889.1 3819759..3820493(-) (comFC) [Bacillus licheniformis strain SRCM103583]
ATGAAAACCCGCTTTGCGCAAGCAATCGAAGAGGGAGGGAATAAACTGAATTGTTTAATTTGTGCAGCGCCTCTTTTACA
TTCTCTCTCATGGCATTCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGAATGTAAAGAGAACTTTATCGAGA
TCAAAGGAACCGTATGCCCTAAGTGCGGACGGCCACAGGGGAGCGAAGAGCTGTGCGGTGACTGCGCAAAATGGGAGGCC
AATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTTTATCTCTACAATACTTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCCCCTTCATTTATCAGCGCTTTTCAACAATACTTCCGCC
GCAGCCCGTCTGTTTTAGTTCCGATACCTCTCAGTGAAGAACGTAAAGCGGAGAGGGGATTTAATCAGGCGGAGCGTCTT
GCTTCCTTATTACAAAGACCCGTTATTCATCCCTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGGAAAGA
GCGAATTAAGCCAAAAACCGTTTTTAGAACCGAAAAGGGGTCAGTAAAGAATCTGGATGTCATATTGATTGACGACTTGT
ATACAACAGGAGCGACCCTTCATCATGCCGCTGATTGCCTGATGACATCCGGAGAAGCAAAATCTGTATCATCATATACA
TTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-242)

Double zinc ribbon domain (DZR_2)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.743

97.131

0.512

Multiple sequence alignment