Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   VCD_RS00040 Genome accession   NC_012668
Coordinates   7161..7772 (+) Length   203 a.a.
NCBI ID   WP_000340098.1    Uniprot ID   B2CKP3
Organism   Vibrio cholerae MJ-1236     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2161..12772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCD_RS00020 (VCD_001021) - 2494..3411 (-) 918 WP_000271063.1 ABC transporter ATP-binding protein -
  VCD_RS00025 (VCD_001022) - 3795..5441 (-) 1647 WP_000484911.1 SulP family inorganic anion transporter -
  VCD_RS00030 (VCD_001023) can 5589..6257 (+) 669 WP_001114117.1 carbonate dehydratase -
  VCD_RS00035 (VCD_001024) hpt 6332..6865 (-) 534 WP_000683351.1 hypoxanthine phosphoribosyltransferase -
  VCD_RS00040 (VCD_001025) hapR 7161..7772 (+) 612 WP_000340098.1 quorum-sensing master transcriptional regulator HapR Regulator
  VCD_RS00045 (VCD_001026) rsmI 7986..8852 (-) 867 WP_000131542.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  VCD_RS00050 (VCD_001027) - 8922..10727 (+) 1806 WP_001015481.1 penicillin-binding protein activator -
  VCD_RS00055 (VCD_001028) - 10714..11082 (+) 369 WP_001893625.1 YraN family protein -
  VCD_RS00060 (VCD_001029) - 11086..11676 (+) 591 WP_000887295.1 phosphoheptose isomerase -
  VCD_RS00065 (VCD_001030) - 11679..12248 (+) 570 WP_000836326.1 BON domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23692.39 Da        Isoelectric Point: 6.6356

>NTDB_id=34042 VCD_RS00040 WP_000340098.1 7161..7772(+) (hapR) [Vibrio cholerae MJ-1236]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKTNLQTLCKEMVKLAMTDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIRNMFMKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGEQEAVYKLADSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=34042 VCD_RS00040 WP_000340098.1 7161..7772(+) (hapR) [Vibrio cholerae MJ-1236]
ATGGACGCATCAATCGAAAAACGCCCTCGAACTCGGCTATCGCCTCAAAAACGCAAACTACAACTGATGGAAATCGCGTT
GGAAGTGTTTGCTAAACGCGGCATTGGTCGTGGTGGTCACGCAGATATTGCCGAGATTGCGCAAGTCTCCGTTGCAACAG
TGTTCAACTACTTCCCAACTCGTGAAGACTTGGTTGACGATGTGCTGAATTTTGTGGTTCGTCAGTACTCCAACTTCTTG
ACCGATCACATCGATCTTGATTTGGATGTGAAAACCAACCTACAAACTCTGTGCAAAGAGATGGTGAAATTGGCGATGAC
CGATTGTCACTGGCTCAAAGTCTGGTTTGAGTGGAGTGCTTCAACCCGTGACGAAGTTTGGCCACTGTTTGTTTCCACCA
ACCGAACTAACCAACTGCTGATCAGAAACATGTTTATGAAAGCGATGGAGCGTGGCGAATTGTGTGAGAAACACGATGTC
GATAACATGGCCAGCCTGTTCCACGGCATCTTCTACTCCATCTTCTTACAAGTGAACCGTTTAGGTGAACAAGAAGCAGT
GTATAAGTTGGCCGATAGCTACCTCAATATGCTGTGTATCTATAAGAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 6D7R
  PDB 7XXN
  PDB 7XXO
  PDB 7XXS
  PDB 7XXT
  PDB 7XY0
  PDB 7XY5
  PDB 7XYI
  PDB 7Y4J

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

100

100

1
  hapR Vibrio cholerae strain A1552

100

100

1
  opaR Vibrio parahaemolyticus RIMD 2210633

72.222

97.537

0.704

Multiple sequence alignment