Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ETA15_RS02160 Genome accession   NZ_CP035403
Coordinates   411033..411482 (-) Length   149 a.a.
NCBI ID   WP_017696127.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103581     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 406033..416482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS02125 (ETA15_02125) yckA 406308..406988 (-) 681 WP_017696121.1 amino acid ABC transporter permease -
  ETA15_RS02130 (ETA15_02130) yckB 406998..407861 (-) 864 WP_072557073.1 transporter substrate-binding domain-containing protein -
  ETA15_RS02135 (ETA15_02135) - 408024..408214 (+) 191 Protein_374 hypothetical protein -
  ETA15_RS02140 (ETA15_02140) - 408259..408570 (+) 312 Protein_375 RDD family protein -
  ETA15_RS02145 (ETA15_02145) yckD 408652..408984 (+) 333 WP_015252849.1 YckD family protein -
  ETA15_RS02150 (ETA15_02150) bglC 409138..410571 (+) 1434 WP_017696125.1 6-phospho-beta-glucosidase -
  ETA15_RS02155 (ETA15_02155) nin/comJ 410608..411006 (-) 399 WP_017696126.1 DNA-entry nuclease inhibitor Regulator
  ETA15_RS02160 (ETA15_02160) nucA/comI 411033..411482 (-) 450 WP_017696127.1 DNA-entry nuclease Machinery gene
  ETA15_RS02165 (ETA15_02165) tlpC 411650..413371 (-) 1722 WP_026113668.1 methyl-accepting chemotaxis protein TlpC -
  ETA15_RS02170 (ETA15_02170) hxlB 413482..414039 (-) 558 WP_017696129.1 6-phospho-3-hexuloisomerase -
  ETA15_RS02175 (ETA15_02175) hxlA 414045..414677 (-) 633 WP_017696130.1 3-hexulose-6-phosphate synthase -
  ETA15_RS02180 (ETA15_02180) hxlR 414909..415271 (+) 363 WP_017696131.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16412.34 Da        Isoelectric Point: 4.5282

>NTDB_id=340305 ETA15_RS02160 WP_017696127.1 411033..411482(-) (nucA/comI) [Bacillus subtilis strain SRCM103581]
MNITTDIIKTILLVIVIIAAAAAGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=340305 ETA15_RS02160 WP_017696127.1 411033..411482(-) (nucA/comI) [Bacillus subtilis strain SRCM103581]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGCCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment