Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PGTDC60_RS05365 Genome accession   NC_015571
Coordinates   1264501..1265124 (-) Length   207 a.a.
NCBI ID   WP_013815993.1    Uniprot ID   -
Organism   Porphyromonas gingivalis TDC60     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1259501..1270124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGTDC60_RS05345 - 1259726..1259899 (+) 174 WP_230456085.1 hypothetical protein -
  PGTDC60_RS10345 (PGTDC60_1222) - 1260136..1260411 (+) 276 WP_013815988.1 hypothetical protein -
  PGTDC60_RS05350 (PGTDC60_1224) - 1260722..1261957 (-) 1236 WP_013815990.1 ABC transporter permease -
  PGTDC60_RS05355 (PGTDC60_1225) ligA 1261970..1263979 (-) 2010 WP_013815991.1 NAD-dependent DNA ligase LigA -
  PGTDC60_RS05360 (PGTDC60_1226) - 1263967..1264494 (-) 528 WP_013815992.1 GNAT family N-acetyltransferase -
  PGTDC60_RS05365 (PGTDC60_1227) recR 1264501..1265124 (-) 624 WP_013815993.1 recombination mediator RecR Machinery gene
  PGTDC60_RS05370 (PGTDC60_1228) - 1265121..1266635 (-) 1515 WP_013815994.1 Rne/Rng family ribonuclease -
  PGTDC60_RS05375 (PGTDC60_1229) - 1266957..1267235 (-) 279 WP_004584585.1 HU family DNA-binding protein -
  PGTDC60_RS05380 (PGTDC60_1230) nrdG 1267347..1267838 (-) 492 WP_004584586.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23113.47 Da        Isoelectric Point: 6.0081

>NTDB_id=34028 PGTDC60_RS05365 WP_013815993.1 1264501..1265124(-) (recR) [Porphyromonas gingivalis TDC60]
MIQKYPSHLLEKAIDQFATLPGVGRKTALRLALYLLRQPVENTRQFAAALVDLREHISYCRRCHNISDSDVCTICADPTR
DQSTLCVVENIRDVMAIENTSRYRGLYHVLGGVISPMDGIGPGDLQIDSLVHRVASEQIREVILALSTTMEGDTTNFFLF
RKLEPTGVRVSVIARGIAIGDEIEYADEITLGRSILNRTDFSDSVKF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=34028 PGTDC60_RS05365 WP_013815993.1 1264501..1265124(-) (recR) [Porphyromonas gingivalis TDC60]
ATGATACAGAAATATCCTTCGCATCTGCTTGAGAAGGCGATAGACCAATTTGCTACATTGCCGGGTGTAGGGCGCAAGAC
AGCCCTGCGCCTGGCTTTGTACTTATTGCGCCAACCTGTGGAAAATACCCGTCAATTTGCAGCAGCCCTTGTAGATCTTC
GGGAACATATTTCCTATTGCAGGCGCTGTCATAATATCAGTGATTCCGATGTTTGTACTATTTGTGCAGACCCCACTCGG
GATCAGAGTACACTCTGTGTAGTAGAGAATATCCGTGACGTTATGGCTATCGAGAATACCTCACGGTATCGAGGCTTGTA
TCATGTACTTGGTGGAGTCATATCTCCCATGGATGGGATCGGCCCGGGCGATTTGCAAATAGATTCTCTGGTGCATCGAG
TAGCTTCCGAACAGATTCGTGAGGTTATATTGGCTTTGAGTACGACGATGGAGGGCGATACTACCAACTTTTTCCTCTTT
CGCAAGTTGGAGCCTACCGGCGTTCGGGTCAGTGTAATTGCTCGAGGCATTGCTATAGGCGATGAGATCGAATATGCCGA
TGAGATTACCCTCGGTCGTTCTATTCTCAATCGTACCGATTTCTCCGACTCAGTCAAATTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(43-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.744

96.135

0.469
  recR Streptococcus pneumoniae R6

46.701

95.169

0.444
  recR Bacillus subtilis subsp. subtilis str. 168

44.444

95.652

0.425

Multiple sequence alignment