Detailed information NTG0340134

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: FOB75_RS07845
• Genome accession: NZ_CP044062
• Coordinates: 1547003..1548283 (-)
• Length: 426 a.a.
• NCBI ID: WP_005460618.1
• Uniprot ID: Q87R79
• Organism: Vibrio parahaemolyticus strain FDAARGOS_667
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1542003..1553283

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOB75_RS07835 (FOB75_07835)	-	1544054..1544326 (-)	273	WP_005382341.1	HU family DNA-binding protein	-
FOB75_RS07840 (FOB75_07840)	lon	1544519..1546870 (-)	2352	WP_015296438.1	endopeptidase La	-
FOB75_RS07845 (FOB75_07845)	clpX	1547003..1548283 (-)	1281	WP_005460618.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
FOB75_RS07850 (FOB75_07850)	clpP	1548355..1548981 (-)	627	WP_005460620.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
FOB75_RS07855 (FOB75_07855)	tig	1549087..1550391 (-)	1305	WP_005460612.1	trigger factor	-
FOB75_RS24855	-	1550685..1550870 (-)	186	WP_020840285.1	hypothetical protein	-
FOB75_RS07860 (FOB75_07860)	-	1550917..1552719 (+)	1803	WP_150334378.1	ATP-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46693.23 Da
• Isoelectric Point: 4.5914

>NTDB_id=340134 FOB75_RS07845 WP_005460618.1 1547003..1548283(-) (clpX) [Vibrio parahaemolyticus strain FDAARGOS_667]
MTDKSKESGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKDVLPKKESEALPTPKQIREHLDDYVI
GQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVAKAERGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKNETKTVGELFTQVEPEDLVKYGLIPEFIGRLPVTTTLTELD
EEALIQILCEPKNALTKQYAALFELENAELEFREDALRAIAKKAMERKTGARGLRSILESVLLETMYELPSATDVSKVVI
DESVINGESEPLLIYSNADNQAAGAE

Nucleotide

• Length: 1281 bp

>NTDB_id=340134 FOB75_RS07845 WP_005460618.1 1547003..1548283(-) (clpX) [Vibrio parahaemolyticus strain FDAARGOS_667]
ATGACAGATAAAAGCAAAGAAAGTGGCAGCGGTAAATTGCTGTACTGTTCTTTCTGCGGCAAAAGTCAGCACGAAGTTCG
CAAGCTAATCGCAGGTCCGTCAGTTTACATTTGCGACGAGTGTGTCGACCTATGTAACGATATTATTCGCGAAGAAATCA
AGGATGTTCTCCCTAAGAAAGAATCTGAAGCGTTACCAACGCCAAAACAGATCCGTGAACACCTTGACGACTATGTGATC
GGACAAGATTACGCGAAAAAAGTGCTCGCAGTTGCGGTATATAACCACTACAAGCGTTTACGCAATGGTGATACAACGAG
CGAAGGTGTGGAGCTTGGTAAAAGTAACATCCTTCTAATTGGTCCTACAGGTAGTGGTAAAACGCTGCTTGCTGAGACGC
TAGCTCGATTCTTGGATGTGCCATTCACAATGGCAGACGCAACCACACTAACCGAAGCTGGTTATGTGGGTGAAGACGTT
GAAAACATCATCCAAAAGCTTCTGCAAAAATGTGATTACGATGTAGCGAAGGCTGAACGCGGCATTGTTTACATTGACGA
AATTGACAAAATTTCTCGCAAAGCTGAAAACCCATCAATTACGCGTGACGTATCTGGTGAGGGTGTTCAGCAAGCGCTAT
TGAAACTTATCGAAGGTACGGTTGCTTCAGTTCCACCTCAAGGTGGTCGTAAGCATCCACAGCAAGAATTCCTACAAGTG
GACACGTCTAAGATCCTGTTCATCTGTGGTGGTGCATTTGCTGGTTTAGATAAAGTTATCGAACAGCGTGTAGCTACTGG
TACTGGTATCGGCTTTGGTGCAGAAGTGCGCTCGAAGAACGAAACTAAAACCGTCGGCGAACTGTTTACTCAGGTTGAGC
CAGAAGATCTAGTGAAGTATGGTTTGATTCCAGAATTCATTGGTCGTCTTCCTGTGACAACAACACTGACAGAGCTTGAT
GAAGAAGCGTTGATTCAGATCCTATGTGAACCGAAAAACGCACTGACCAAGCAGTATGCAGCATTGTTTGAGCTAGAAAA
CGCAGAGCTTGAATTCCGTGAAGATGCCCTTCGTGCTATCGCGAAGAAAGCAATGGAACGTAAGACAGGTGCTCGTGGTT
TGCGTTCAATTCTGGAAAGTGTTCTGCTTGAAACCATGTACGAACTGCCATCAGCGACAGATGTAAGTAAAGTCGTGATT
GATGAATCCGTCATCAATGGTGAGTCAGAACCACTGCTTATTTACAGCAATGCCGACAATCAGGCAGCTGGAGCAGAATA
A

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

3D structure

• AlphaFold DB: Q87R79

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	58.853	94.131	0.554
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.321	95.07	0.516