Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ETA18_RS16340 Genome accession   NZ_CP035400
Coordinates   3120744..3121388 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103835     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3115744..3126388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS16305 (ETA18_16305) mrpB 3116936..3117367 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ETA18_RS16310 (ETA18_16310) mrpC 3117367..3117708 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ETA18_RS16315 (ETA18_16315) mrpD 3117701..3119182 (+) 1482 WP_128993337.1 Na+/H+ antiporter subunit D -
  ETA18_RS16320 (ETA18_16320) mrpE 3119188..3119664 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  ETA18_RS16325 (ETA18_16325) mrpF 3119664..3119948 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ETA18_RS16330 (ETA18_16330) mnhG 3119932..3120306 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  ETA18_RS16335 (ETA18_16335) yuxO 3120345..3120725 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  ETA18_RS16340 (ETA18_16340) comA 3120744..3121388 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ETA18_RS16345 (ETA18_16345) comP 3121469..3123778 (-) 2310 WP_015251333.1 two-component system sensor histidine kinase ComP Regulator
  ETA18_RS16350 (ETA18_16350) comX 3123793..3123960 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  ETA18_RS16355 (ETA18_16355) comQ 3123948..3124847 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  ETA18_RS16360 (ETA18_16360) degQ 3125032..3125172 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ETA18_RS16365 (ETA18_16365) - 3125394..3125519 (+) 126 WP_003228793.1 hypothetical protein -
  ETA18_RS16370 (ETA18_16370) - 3125633..3126001 (+) 369 WP_128993338.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=340118 ETA18_RS16340 WP_003220716.1 3120744..3121388(-) (comA) [Bacillus subtilis strain SRCM103835]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=340118 ETA18_RS16340 WP_003220716.1 3120744..3121388(-) (comA) [Bacillus subtilis strain SRCM103835]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment