Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ETA12_RS15930 Genome accession   NZ_CP035399
Coordinates   3173383..3174027 (-) Length   214 a.a.
NCBI ID   WP_129093769.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM103788     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3168383..3179027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA12_RS15895 (ETA12_15895) - 3169568..3169999 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  ETA12_RS15900 (ETA12_15900) - 3169999..3170340 (+) 342 WP_022553706.1 Na(+)/H(+) antiporter subunit C -
  ETA12_RS15905 (ETA12_15905) - 3170333..3171814 (+) 1482 WP_128974217.1 Na+/H+ antiporter subunit D -
  ETA12_RS15910 (ETA12_15910) - 3171820..3172296 (+) 477 WP_129093768.1 Na+/H+ antiporter subunit E -
  ETA12_RS15915 (ETA12_15915) - 3172296..3172580 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  ETA12_RS15920 (ETA12_15920) mnhG 3172564..3172938 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  ETA12_RS15925 (ETA12_15925) - 3172978..3173361 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  ETA12_RS15930 (ETA12_15930) comA 3173383..3174027 (-) 645 WP_129093769.1 response regulator transcription factor Regulator
  ETA12_RS15935 (ETA12_15935) comP 3174108..3176411 (-) 2304 WP_070082286.1 histidine kinase Regulator
  ETA12_RS15940 (ETA12_15940) comX 3176431..3176610 (-) 180 WP_318010531.1 competence pheromone ComX -
  ETA12_RS15945 (ETA12_15945) comQ 3176564..3177550 (-) 987 WP_269321599.1 class 1 isoprenoid biosynthesis enzyme Regulator
  ETA12_RS15950 (ETA12_15950) degQ 3177681..3177821 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ETA12_RS15960 (ETA12_15960) - 3178286..3178627 (+) 342 WP_021495366.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24284.66 Da        Isoelectric Point: 4.9953

>NTDB_id=340039 ETA12_RS15930 WP_129093769.1 3173383..3174027(-) (comA) [Bacillus velezensis strain SRCM103788]
MKKILVIDDHPAVIEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=340039 ETA12_RS15930 WP_129093769.1 3173383..3174027(-) (comA) [Bacillus velezensis strain SRCM103788]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATAGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCAGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCATGTGCTGAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCTGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGTACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.514

100

0.855

Multiple sequence alignment