Detailed information NTG0340022

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FVA82_RS07195
• Genome accession: NZ_CP044006
• Coordinates: 1506665..1507669 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain E90
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1501665..1512669

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FVA82_RS07165 (FVA82_07165)	fghA	1501757..1502608 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
FVA82_RS07170 (FVA82_07170)	ispF	1502679..1503152 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FVA82_RS07175 (FVA82_07175)	truD	1503149..1504216 (+)	1068	WP_012613728.1	tRNA pseudouridine(13) synthase TruD	-
FVA82_RS07180 (FVA82_07180)	surE	1504204..1504953 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
FVA82_RS07185 (FVA82_07185)	-	1504986..1505621 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FVA82_RS07190 (FVA82_07190)	-	1505667..1506560 (+)	894	WP_023089397.1	peptidoglycan DD-metalloendopeptidase family protein	-
FVA82_RS07195 (FVA82_07195)	rpoS	1506665..1507669 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
FVA82_RS07200 (FVA82_07200)	fdxA	1508096..1508419 (-)	324	WP_003119354.1	ferredoxin FdxA	-
FVA82_RS07205 (FVA82_07205)	mutS	1508486..1511053 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
FVA82_RS07215 (FVA82_07215)	-	1511179..1512186 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=340022 FVA82_RS07195 WP_003113871.1 1506665..1507669(+) (rpoS) [Pseudomonas aeruginosa strain E90]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=340022 FVA82_RS07195 WP_003113871.1 1506665..1507669(+) (rpoS) [Pseudomonas aeruginosa strain E90]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653