Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F3K21_RS30420 Genome accession   NZ_CP043957
Coordinates   7029458..7031080 (+) Length   540 a.a.
NCBI ID   WP_060888942.1    Uniprot ID   -
Organism   Streptomyces sp. LBUM 1480     
Function   promote branch migration (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7024458..7036080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K21_RS30385 (F3K21_30900) lepB 7024528..7025256 (+) 729 WP_013000406.1 signal peptidase I -
  F3K21_RS30390 (F3K21_30905) lepB 7025249..7026379 (+) 1131 WP_013000405.1 signal peptidase I -
  F3K21_RS30395 (F3K21_30910) lepB 7026345..7027235 (+) 891 WP_013000404.1 signal peptidase I -
  F3K21_RS30400 (F3K21_30915) lepB 7027315..7028061 (+) 747 WP_013000403.1 signal peptidase I -
  F3K21_RS30405 (F3K21_30920) - 7028051..7028566 (+) 516 WP_013000402.1 NUDIX hydrolase -
  F3K21_RS30410 (F3K21_30925) - 7028623..7028931 (+) 309 WP_005311352.1 DUF2469 domain-containing protein -
  F3K21_RS30415 (F3K21_30930) - 7029093..7029458 (+) 366 WP_013000400.1 YraN family protein -
  F3K21_RS30420 (F3K21_30935) comM 7029458..7031080 (+) 1623 WP_060888942.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F3K21_RS30425 (F3K21_30940) dprA 7031115..7032272 (+) 1158 WP_041669117.1 DNA-processing protein DprA -
  F3K21_RS30430 (F3K21_30945) whiG 7032546..7033382 (+) 837 WP_037724696.1 RNA polymerase sigma factor WhiG -
  F3K21_RS30435 (F3K21_30950) - 7033471..7034028 (+) 558 WP_041669114.1 TetR/AcrR family transcriptional regulator -
  F3K21_RS30440 (F3K21_30955) - 7034236..7034922 (-) 687 WP_234324991.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 56383.88 Da        Isoelectric Point: 6.7150

>NTDB_id=339906 F3K21_RS30420 WP_060888942.1 7029458..7031080(+) (comM) [Streptomyces sp. LBUM 1480]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKAGSG
FDLAVACAVLGASERIDPKVLSDIVMIGELGLDGRVRPVRGILPAVLAAAQAGYEQVVVPECAAPEASLVPGVSVLGVRT
LRQLIAVLADEPVPDEEPDEGRPDPLLAGLRLPGAGAATGMHTTGAAQQDLGHDLADVVGQLAARTAVEVAAAGGHHLFL
EGPPGAGKTMLAERLPAILPALTRAESLEVTAVHSIAGLLPVGKPLVDVAPYCAPHHSATMQALVGGGQGVARPGAVSLA
HRGVLFLDETPEFGSQALDALRQPLEAGHVVIARSAGVVRFPAKFLMVLAANPCPCGRFSRTDDLCECPPAAVRRYQARL
SGPLLDRVDLRVEIDRVTRSELSRRGARGESTATVADRVRRARERTAARLLGTPWGTNSEVPGRELRSRWHAMPGAMDEA
ERCLERGVLTARGLDRVLRVAWTVADLVGHDRPDATDVNLALQLRTGVPRGVPMTIGALA

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=339906 F3K21_RS30420 WP_060888942.1 7029458..7031080(+) (comM) [Streptomyces sp. LBUM 1480]
ATGGGATTCGCCCGCACATGCTCCGTGGCCCTTGTGGGGGTCGAGGGCGTCGTCGTCGAGGTGCAGGCCGACCTGGAACC
GGGCGTGGCAGCCTTCACCCTGGTGGGGCTGCCGGACAAGAGCCTCACGGAGAGCAGGGACCGGGTCAGGGCCGCGGTGG
TCAACTCGGGTGCCGAGTGGCCGCAGAAGAAGCTGACGGTGGGACTCAGCCCCGCCTCGGTCCCGAAGGCCGGCAGCGGG
TTCGACCTGGCCGTCGCCTGTGCGGTCCTCGGCGCCTCCGAGCGGATCGACCCGAAGGTGCTCTCCGACATCGTGATGAT
CGGAGAACTGGGACTCGACGGCCGGGTCCGGCCGGTCCGGGGCATCCTGCCCGCCGTGCTGGCCGCCGCCCAGGCCGGAT
ACGAGCAGGTGGTGGTACCGGAGTGCGCCGCCCCGGAAGCCTCGCTCGTGCCCGGCGTCTCGGTCCTGGGCGTGCGCACC
CTGCGGCAGCTGATCGCCGTGCTGGCGGACGAACCGGTGCCGGACGAGGAACCCGACGAGGGCCGGCCGGACCCCCTCCT
GGCGGGCCTCCGGCTGCCCGGCGCGGGGGCCGCCACCGGGATGCACACGACGGGAGCGGCGCAGCAGGACCTGGGCCACG
ACCTCGCCGACGTCGTCGGCCAGCTCGCCGCGCGGACCGCCGTGGAGGTGGCCGCTGCGGGCGGGCACCATCTCTTCCTG
GAGGGCCCGCCGGGCGCGGGCAAGACGATGCTCGCCGAGCGCCTGCCGGCGATCCTTCCCGCGCTGACCAGGGCGGAGTC
GCTGGAGGTCACGGCCGTCCACTCGATCGCCGGTCTGCTGCCCGTGGGGAAGCCGCTGGTGGACGTGGCACCCTACTGCG
CCCCGCACCACTCGGCCACGATGCAGGCCCTCGTGGGCGGCGGTCAGGGCGTCGCCCGGCCGGGTGCGGTCTCCCTGGCG
CACCGCGGGGTCCTCTTCCTCGACGAGACCCCCGAGTTTGGCAGCCAGGCCCTGGACGCCCTGCGCCAGCCCCTGGAGGC
GGGGCACGTGGTGATCGCGCGCAGTGCCGGAGTGGTCCGCTTCCCGGCGAAGTTCCTGATGGTGCTGGCCGCCAACCCCT
GTCCCTGCGGTCGCTTCTCCCGGACGGACGACCTGTGCGAGTGTCCGCCCGCCGCGGTCCGCCGCTACCAGGCACGGCTC
TCCGGTCCGCTGCTGGACCGGGTCGACCTGCGGGTCGAGATCGACCGGGTCACCCGGTCCGAACTGTCCCGGCGCGGGGC
CCGGGGCGAGTCGACGGCGACCGTGGCCGATCGCGTGCGCAGGGCCAGGGAACGGACGGCCGCACGTCTGCTCGGGACGC
CCTGGGGCACGAACAGCGAGGTACCGGGGCGCGAACTGCGCAGCCGGTGGCACGCGATGCCGGGCGCCATGGACGAGGCC
GAGCGCTGCCTGGAGCGGGGGGTGCTGACCGCTCGGGGCCTGGACCGTGTGCTCCGTGTCGCCTGGACCGTCGCCGACCT
CGTCGGCCACGACCGCCCGGACGCGACGGACGTCAACCTGGCCCTGCAACTGCGCACCGGAGTCCCGCGCGGCGTGCCGA
TGACGATCGGAGCGCTGGCATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(429-525)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(214-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

39.469

97.593

0.385
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.784

94.444

0.385
  comM Vibrio cholerae strain A1552

40.784

94.444

0.385
  comM Vibrio campbellii strain DS40M4

39.279

97.593

0.383
  comM Legionella pneumophila str. Paris

37.453

98.889

0.37
  comM Legionella pneumophila strain ERS1305867

37.453

98.889

0.37
  comM Glaesserella parasuis strain SC1401

38.16

94.63

0.361

Multiple sequence alignment