Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   F3K21_RS30230 Genome accession   NZ_CP043957
Coordinates   6990441..6992681 (+) Length   746 a.a.
NCBI ID   WP_210533620.1    Uniprot ID   -
Organism   Streptomyces sp. LBUM 1480     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6985441..6997681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K21_RS30220 (F3K21_30735) - 6985447..6988383 (-) 2937 WP_037724720.1 tetratricopeptide repeat protein -
  F3K21_RS30225 (F3K21_30740) - 6988392..6990236 (-) 1845 WP_037724719.1 HSP90 family protein -
  F3K21_RS30230 (F3K21_30745) recG 6990441..6992681 (+) 2241 WP_210533620.1 ATP-dependent DNA helicase RecG Machinery gene
  F3K21_RS30235 (F3K21_30750) rsmD 6992876..6993463 (+) 588 WP_037724716.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  F3K21_RS30240 (F3K21_30755) coaD 6993490..6993969 (+) 480 WP_013000432.1 pantetheine-phosphate adenylyltransferase -
  F3K21_RS30245 (F3K21_30760) - 6994047..6995132 (+) 1086 WP_013000431.1 hypothetical protein -
  F3K21_RS30250 (F3K21_30765) - 6995287..6995931 (+) 645 WP_210533621.1 DUF177 domain-containing protein -
  F3K21_RS30255 (F3K21_30770) rpmF 6995934..6996107 (+) 174 WP_007493396.1 50S ribosomal protein L32 -
  F3K21_RS30260 (F3K21_30775) rnc 6996115..6996945 (+) 831 WP_173402867.1 ribonuclease III -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 80740.08 Da        Isoelectric Point: 6.4030

>NTDB_id=339905 F3K21_RS30230 WP_210533620.1 6990441..6992681(+) (recG) [Streptomyces sp. LBUM 1480]
MDPVPALEEPLKNSLGAATAKVMAEHLGLHTVGDLLHHYPRRYEERGRLTRLADLPMDEHVTVVAQVADARLHTFASAKA
PRGKGQRLEVTITDGSGRLQLVFFGHGVHKPHKDLLPGTRALFAGKVSVFNRRLQLAHPAYELLRGEGDSEDTETVDTWA
GALIPIYPATAKLESWKIAKAVQTVLPSAQEAVDPLPDSLREGRGLVSLPEALVKIHRPHTKADRDSARDRLKWDEAFVL
QVALARRRHADSQLPAVARRPASDGLLTAFDARLPFTLTDGQRKVSREIFDDLATEHPMHRLLQGEVGSGKTLVALRAML
AVVDAGGQAAMLAPTEVLAQQHHRSVTEMMGELAEGGMLGGSEHATKVVLLTGSMGAAGRRQALLDLVTGEAGIVIGTHA
LIEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLDTSVLDQLPAGRSPIASHVV
PAADKPHFLARAWERVREEVEKGHQAYVVCPRIGDDVDEPADPNRTGAKKSGGKSPEDEAEKRPPLAVLDVADQLAKGPL
QGLRVEVLHGRMHPDDKDAVMRRFAAGETHVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCL
LVTEMPEASPARQRLGAVAATLDGFELSRIDLEQRREGDVLGQAQSGARTSLRMLTVIDDEEIIAEARQEAAAVVAADPD
LDHLPALRTALDALLDEEREQYLDKG

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=339905 F3K21_RS30230 WP_210533620.1 6990441..6992681(+) (recG) [Streptomyces sp. LBUM 1480]
ATGGATCCCGTGCCCGCGCTCGAAGAACCGCTCAAGAACTCGCTCGGCGCCGCCACCGCGAAGGTGATGGCCGAGCACCT
CGGCCTGCACACCGTCGGGGACCTGCTGCACCACTACCCCCGCAGGTACGAGGAGCGCGGCCGGCTCACCCGTCTCGCCG
ACCTGCCCATGGACGAGCACGTCACGGTGGTCGCCCAGGTAGCCGACGCCCGCCTGCACACCTTCGCCTCCGCCAAGGCC
CCCCGGGGCAAGGGCCAGCGTCTCGAAGTGACCATCACCGACGGCAGCGGCCGCCTCCAGCTCGTCTTCTTCGGTCACGG
CGTCCACAAACCCCACAAGGACCTCCTCCCCGGCACCCGCGCGCTGTTCGCCGGCAAGGTCTCCGTCTTCAACCGCCGCC
TGCAGCTCGCCCACCCGGCCTACGAGCTGCTGCGCGGGGAGGGCGACAGCGAGGACACCGAGACCGTCGACACCTGGGCC
GGCGCCCTCATCCCGATCTACCCGGCCACCGCCAAACTGGAGTCCTGGAAGATCGCCAAGGCCGTCCAGACGGTCCTGCC
GAGCGCCCAGGAGGCCGTGGACCCGCTGCCCGATTCCCTGCGGGAGGGCCGGGGCCTGGTCTCACTGCCCGAGGCCCTCG
TGAAGATCCACCGCCCCCACACCAAGGCGGACCGGGACAGCGCCCGCGACCGCCTCAAGTGGGACGAGGCCTTCGTCCTC
CAGGTCGCCCTCGCCCGCCGTCGCCACGCCGACTCCCAGCTCCCCGCCGTCGCCCGCCGTCCCGCCTCCGACGGCCTCCT
CACCGCCTTCGACGCCCGCCTCCCCTTCACTCTCACCGACGGGCAGCGGAAGGTCTCCCGGGAGATCTTCGACGACCTGG
CCACCGAGCACCCGATGCACCGGCTGCTCCAGGGCGAGGTCGGTTCCGGCAAGACGCTGGTGGCCCTGCGCGCCATGCTC
GCCGTCGTCGACGCGGGCGGCCAGGCGGCCATGCTCGCGCCCACCGAGGTGCTCGCCCAGCAGCATCACCGGTCGGTGAC
CGAGATGATGGGCGAGCTGGCCGAGGGCGGCATGCTCGGCGGATCGGAGCACGCCACCAAGGTGGTGCTCCTCACCGGCT
CGATGGGCGCCGCGGGCCGTCGGCAGGCCCTGCTGGACCTGGTCACCGGCGAGGCCGGGATCGTCATCGGCACCCACGCG
CTGATCGAGGACAAGGTGCAGTTCCACGACCTGGGCCTGGTCGTCGTGGACGAGCAGCACCGCTTCGGCGTCGAGCAGCG
CGACGCCCTGCGCGGCAAGGGCAAACAGCCGCCCCACCTGCTGGTCATGACGGCCACCCCCATCCCGCGTACGGTCGCGA
TGACCGTCTTCGGTGACCTGGACACCTCGGTCCTCGACCAGCTGCCCGCCGGCCGCTCGCCCATCGCCAGCCATGTCGTC
CCCGCCGCCGACAAGCCGCACTTCCTCGCCCGCGCGTGGGAGCGCGTGCGCGAGGAGGTGGAGAAGGGCCACCAGGCGTA
CGTCGTCTGCCCCCGCATCGGGGACGACGTCGACGAACCCGCCGACCCGAACAGGACCGGCGCGAAGAAGAGCGGCGGGA
AGTCCCCCGAGGACGAGGCCGAGAAGCGCCCGCCCCTCGCCGTCCTCGACGTCGCGGACCAGCTCGCCAAGGGCCCACTC
CAGGGTCTGCGGGTCGAGGTCCTGCACGGCAGGATGCACCCCGACGACAAGGACGCGGTCATGCGCCGCTTCGCCGCCGG
CGAGACGCATGTCCTGGTCGCCACCACGGTCATCGAGGTAGGGGTGAACGTCCCGAACGCCACCGCCATGGTGATCATGG
ACGCCGACCGCTTCGGCGTCTCCCAGCTCCACCAGCTGCGCGGCCGGGTGGGCCGGGGATCCGCCGCCGGACTCTGCCTT
CTGGTCACCGAGATGCCCGAGGCGAGTCCGGCCCGCCAACGCCTCGGCGCCGTCGCCGCCACCCTCGACGGCTTCGAACT
CTCCCGCATCGACCTCGAACAGCGCCGCGAGGGCGACGTCCTCGGCCAGGCCCAGTCCGGCGCCCGCACCAGCCTGCGCA
TGCTGACCGTCATCGACGACGAGGAGATCATCGCGGAGGCGAGGCAGGAGGCGGCCGCGGTGGTGGCGGCCGACCCGGAC
CTGGACCACCTCCCGGCGCTGCGGACAGCCCTGGACGCCCTGCTGGACGAGGAGCGGGAGCAGTACCTCGACAAGGGCTG
A

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(661-722)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)

DEAD/DEAH box helicase (DEAD)

(300-452)

Helicase conserved C-terminal domain (Helicase_C)

(561-633)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

37.941

95.04

0.361

Multiple sequence alignment