Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   F3K21_RS24065 Genome accession   NZ_CP043957
Coordinates   5611364..5612773 (-) Length   469 a.a.
NCBI ID   WP_013001639.1    Uniprot ID   C9Z0Q3
Organism   Streptomyces sp. LBUM 1480     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5606364..5617773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K21_RS24045 (F3K21_24430) - 5606628..5607491 (-) 864 WP_246890542.1 A/G-specific adenine glycosylase -
  F3K21_RS24050 (F3K21_24435) - 5607898..5608956 (-) 1059 WP_210533508.1 LLM class flavin-dependent oxidoreductase -
  F3K21_RS24055 (F3K21_24440) - 5609244..5610068 (+) 825 WP_013001641.1 hypothetical protein -
  F3K21_RS24060 (F3K21_24445) disA 5610159..5611283 (-) 1125 WP_037726228.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  F3K21_RS24065 (F3K21_24450) radA/sms 5611364..5612773 (-) 1410 WP_013001639.1 DNA repair protein RadA Machinery gene
  F3K21_RS24070 (F3K21_24455) - 5612849..5614249 (-) 1401 WP_060906558.1 hypothetical protein -
  F3K21_RS24075 (F3K21_24460) - 5614465..5616183 (+) 1719 WP_210533509.1 hypothetical protein -
  F3K21_RS24080 (F3K21_24465) - 5616350..5617240 (-) 891 WP_037726230.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49750.84 Da        Isoelectric Point: 7.4627

>NTDB_id=339893 F3K21_RS24065 WP_013001639.1 5611364..5612773(-) (radA/sms) [Streptomyces sp. LBUM 1480]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVDEYGTPAVRTTAPGRVTTSAVPIGQVDGRQATARTTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAADAENPTLYVTGEESASQVRLRADRIGALHDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQSLTVDSQL
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAATDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKVPPGMKVLEVADMGDALRVLPRSRRREAPRDEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=339893 F3K21_RS24065 WP_013001639.1 5611364..5612773(-) (radA/sms) [Streptomyces sp. LBUM 1480]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCGTGGGGCACGGTCGACGAGTACGGCACGCCGGCCGTCCGTACGACCGCCCCCGGCC
GGGTCACCACCTCCGCCGTGCCCATCGGACAGGTCGACGGCCGCCAGGCCACCGCCCGCACCACCGGGGTCCCGGAGCTG
GACCGGGTCCTCGGCGGCGGCCTGGTCCCCGGCGCCGTGGTCCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACCCT
GCTGCTCGACGTCGCCGCCAAGGCCGCCGACGCCGAGAACCCGACCCTCTACGTCACGGGCGAGGAGTCCGCGAGCCAGG
TGCGTCTGCGGGCCGACCGGATCGGCGCCCTGCACGACCACCTCTACCTCGCCGCCGAGACCGACCTCTCCGCCGTGCTG
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTGATCCTCGACTCGGTCCAGACCGTCGCCTCGCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGCGCGTCCAAGGAGCGCGGCATGTCGACGCTCC
TGGTGGGCCATGTCACCAAGGACGGGGCCATCGCCGGCCCCCGTCTCCTCGAACACCTCGTCGACGTGGTCCTGCACTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTGGTCCGCGGCGTCAAGAACCGCTACGGCGCCACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCACCGACCCCAGCGGCCTCTTCCTCACCCGCCGCGACGAGCCCGTCCCCG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTGGCGGAAGTGCAGTCGCTCACAGTCGACTCGCAGCTG
CCCTCCCCCCGCCGTACGACGTCCGGCCTGGAGACCTCGCGGGTCTCGATGATGCTCGCGGTCCTGGAGCAGCGCGGCCG
GATCAGCGCCCTCGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTCTCGGAACCCGCCGCGGACCTCG
CGATCGCCCTGGCCCTGGCCTCGGCGGCGACCGACACCCCCCTGCCCAAGAACCTCGTGGCGATCGGTGAGGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCCGGCTGTCCGAAGCCCACCGCCTGGGGTTCACGCACGCGCTCGT
TCCGTCCGATCCGGGCAAGGTTCCTCCCGGTATGAAGGTGCTGGAAGTGGCCGACATGGGAGACGCGCTGCGGGTACTGC
CGCGATCCCGTCGGCGAGAGGCCCCACGGGACGAGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9Z0Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.046

96.588

0.416
  radA Streptococcus mitis SK321

42.667

95.949

0.409
  radA Streptococcus mitis NCTC 12261

42.667

95.949

0.409
  radA Streptococcus pneumoniae Rx1

42.222

95.949

0.405
  radA Streptococcus pneumoniae D39

42.222

95.949

0.405
  radA Streptococcus pneumoniae R6

42.222

95.949

0.405
  radA Streptococcus pneumoniae TIGR4

42.222

95.949

0.405

Multiple sequence alignment