Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ES968_RS18675 Genome accession   NZ_CP035395
Coordinates   3487478..3488200 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103697     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3482478..3493200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES968_RS18640 (ES968_18640) fliW 3482618..3483049 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  ES968_RS18645 (ES968_18645) yviE 3483070..3483645 (-) 576 WP_014481045.1 DUF6470 family protein -
  ES968_RS18650 (ES968_18650) flgL 3483692..3484588 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  ES968_RS18655 (ES968_18655) flgK 3484599..3486122 (-) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -
  ES968_RS18660 (ES968_18660) flgN 3486141..3486623 (-) 483 WP_014481048.1 flagellar protein FlgN -
  ES968_RS18665 (ES968_18665) flgM 3486639..3486905 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  ES968_RS18670 (ES968_18670) yvyF 3486986..3487405 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  ES968_RS18675 (ES968_18675) comFC 3487478..3488200 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  ES968_RS18680 (ES968_18680) comFB 3488164..3488460 (-) 297 WP_003227989.1 late competence protein ComFB -
  ES968_RS18685 (ES968_18685) comFA 3488520..3489911 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  ES968_RS18690 (ES968_18690) fakBA 3490018..3490863 (-) 846 WP_014481053.1 DegV family protein -
  ES968_RS18695 (ES968_18695) degU 3490961..3491650 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  ES968_RS18700 (ES968_18700) degS 3491733..3492890 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=339889 ES968_RS18675 WP_014481051.1 3487478..3488200(-) (comFC) [Bacillus subtilis strain SRCM103697]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=339889 ES968_RS18675 WP_014481051.1 3487478..3488200(-) (comFC) [Bacillus subtilis strain SRCM103697]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment