Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   F3K21_RS23020 Genome accession   NZ_CP043957
Coordinates   5356343..5356942 (+) Length   199 a.a.
NCBI ID   WP_013001867.1    Uniprot ID   C9Z3Z6
Organism   Streptomyces sp. LBUM 1480     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5351343..5361942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K21_RS23000 (F3K21_23360) - 5351826..5352311 (+) 486 WP_013001871.1 helix-turn-helix domain-containing protein -
  F3K21_RS23005 (F3K21_23365) - 5352428..5354602 (+) 2175 WP_210533471.1 serine/threonine-protein kinase -
  F3K21_RS23010 (F3K21_23370) - 5354842..5355609 (-) 768 WP_037727414.1 SLATT domain-containing protein -
  F3K21_RS23015 (F3K21_23375) - 5355885..5356232 (+) 348 WP_013001868.1 YbaB/EbfC family nucleoid-associated protein -
  F3K21_RS23020 (F3K21_23380) recR 5356343..5356942 (+) 600 WP_013001867.1 recombination mediator RecR Machinery gene
  F3K21_RS23025 (F3K21_23385) - 5356935..5357600 (+) 666 WP_013001866.1 DUF5063 domain-containing protein -
  F3K21_RS23030 (F3K21_23390) - 5357842..5358777 (+) 936 WP_210533472.1 M56 family metallopeptidase -
  F3K21_RS23035 (F3K21_23395) - 5358938..5359783 (-) 846 WP_060906620.1 alpha/beta hydrolase -
  F3K21_RS23040 (F3K21_23400) - 5359994..5360494 (+) 501 WP_060906619.1 SgcJ/EcaC family oxidoreductase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21746.11 Da        Isoelectric Point: 5.1616

>NTDB_id=339887 F3K21_RS23020 WP_013001867.1 5356343..5356942(+) (recR) [Streptomyces sp. LBUM 1480]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKAKVRFCATCGNVAQEELCGICRDSRRDVTV
ICVVEEPKDVVAIERTREFRGTYHVLGGAISPIEGVGPDDLRIRELLARLADGRVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=339887 F3K21_RS23020 WP_013001867.1 5356343..5356942(+) (recR) [Streptomyces sp. LBUM 1480]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTCCGGCGGCTGGCGCACGCGCTCCTCGAAGTGAAGGCGAAGGTCC
GCTTCTGCGCCACCTGCGGCAACGTCGCGCAGGAGGAGCTGTGCGGGATCTGCCGCGACTCCCGCCGTGACGTCACGGTC
ATCTGTGTCGTGGAGGAGCCGAAGGACGTCGTGGCGATCGAACGCACCCGCGAGTTCCGGGGCACGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGACCTGCGCATACGGGAGCTGCTGGCCCGCCTGGCCGACGGCA
GGGTCACCGAGCTGATCCTGGCCACGGACCCGAATCTCGAAGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAA
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGATTGCTGGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9Z3Z6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462