Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   F3K20_RS32390 Genome accession   NZ_CP043956
Coordinates   7374426..7375202 (-) Length   258 a.a.
NCBI ID   WP_013000266.1    Uniprot ID   C9Z0M2
Organism   Streptomyces sp. LBUM 1482     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7369426..7380202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K20_RS32380 (F3K20_32850) - 7371238..7371957 (+) 720 WP_013000268.1 GNAT family N-acetyltransferase -
  F3K20_RS32385 (F3K20_32855) - 7372204..7374240 (+) 2037 WP_013000267.1 ATP-dependent DNA helicase -
  F3K20_RS32390 (F3K20_32860) dinR/lexA 7374426..7375202 (-) 777 WP_013000266.1 transcriptional repressor LexA Regulator
  F3K20_RS32395 (F3K20_32865) nrdR 7375742..7376305 (+) 564 WP_059081484.1 transcriptional regulator NrdR -
  F3K20_RS32400 (F3K20_32870) - 7376463..7379360 (+) 2898 WP_037723994.1 vitamin B12-dependent ribonucleotide reductase -
  F3K20_RS32405 (F3K20_32875) - 7379463..7379996 (-) 534 WP_013000263.1 TerD family protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27936.61 Da        Isoelectric Point: 7.0666

>NTDB_id=339830 F3K20_RS32390 WP_013000266.1 7374426..7375202(-) (dinR/lexA) [Streptomyces sp. LBUM 1482]
MTTTADSATITAQDRSQSRLEPVHAMNESTNHEGPKRALPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQASAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEPI
PGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=339830 F3K20_RS32390 WP_013000266.1 7374426..7375202(-) (dinR/lexA) [Streptomyces sp. LBUM 1482]
GTGACCACCACCGCTGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCGATGAA
CGAATCCACGAACCATGAAGGGCCCAAGCGAGCCCTGCCCGGCCGACCTCCAGGCATCAGGGCGGACAGCTCCGGGCTCA
CCGATCGGCAGCGCCGGGTCATCGAGGTGATCAGGGACTCGGTGCAGCGGCGTGGATACCCGCCGTCGATGCGCGAGATC
GGCCAGGCGGTCGGCCTGTCCAGCACGTCCTCCGTGGCACACCAGCTGATGGCGCTGGAGCGCAAGGGCTTCCTGCGGCG
CGACCCGCACCGCCCGCGTGCGTACGAGGTCCGCGGCTCCGACCAGGCCTCGGCCCAGCCGACGGACACCGCGGGCAAGC
CGGCCGCCTCGTACGTGCCGCTCGTGGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCCGTCGAGGACGTG
TTCCCGCTGCCCCGCCAGCTGGTGGGTGACGGCGAGCTCTTCGTCCTCAAGGTCGTGGGCGACTCCATGATCGAGGCCGC
CATCTGTGACGGGGACTGGGTGACGGTCCGCCGTCAGCCCGTCGCCGAGAACGGCGACATCGTGGCCGCCATGCTGGACG
GCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCGCACAACGCCGCCTACGAGCCCATC
CCGGGTGACGACGCGACCATCCTCGGCAAGGTGGTGGCCGTTCTGCGCCGCGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9Z0M2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.19

81.395

0.376

Multiple sequence alignment