Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   F3K20_RS25365 Genome accession   NZ_CP043956
Coordinates   5767034..5768443 (-) Length   469 a.a.
NCBI ID   WP_013001639.1    Uniprot ID   C9Z0Q3
Organism   Streptomyces sp. LBUM 1482     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5762034..5773443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K20_RS25345 (F3K20_25700) - 5762227..5763168 (-) 942 WP_210525062.1 A/G-specific adenine glycosylase -
  F3K20_RS25350 (F3K20_25705) - 5763558..5764616 (-) 1059 WP_013001642.1 LLM class flavin-dependent oxidoreductase -
  F3K20_RS25355 (F3K20_25710) - 5764904..5765728 (+) 825 WP_013001641.1 hypothetical protein -
  F3K20_RS25360 (F3K20_25715) disA 5765829..5766953 (-) 1125 WP_037726228.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  F3K20_RS25365 (F3K20_25720) radA/sms 5767034..5768443 (-) 1410 WP_013001639.1 DNA repair protein RadA Machinery gene
  F3K20_RS25370 (F3K20_25725) - 5768519..5769919 (-) 1401 WP_037726229.1 hypothetical protein -
  F3K20_RS25375 (F3K20_25730) - 5770135..5771853 (+) 1719 WP_013001637.1 sigma-70 family RNA polymerase sigma factor -
  F3K20_RS25380 (F3K20_25735) - 5772020..5772910 (-) 891 WP_037726230.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49750.84 Da        Isoelectric Point: 7.4627

>NTDB_id=339815 F3K20_RS25365 WP_013001639.1 5767034..5768443(-) (radA/sms) [Streptomyces sp. LBUM 1482]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVDEYGTPAVRTTAPGRVTTSAVPIGQVDGRQATARTTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAADAENPTLYVTGEESASQVRLRADRIGALHDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQSLTVDSQL
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAATDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKVPPGMKVLEVADMGDALRVLPRSRRREAPRDEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=339815 F3K20_RS25365 WP_013001639.1 5767034..5768443(-) (radA/sms) [Streptomyces sp. LBUM 1482]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCGTGGGGCACGGTCGACGAGTACGGCACGCCGGCCGTCCGTACGACCGCCCCCGGCC
GGGTCACCACCTCCGCCGTGCCCATCGGACAGGTCGACGGCCGCCAGGCCACCGCCCGCACCACCGGGGTCCCGGAGCTG
GACCGGGTCCTCGGCGGCGGCCTGGTCCCCGGCGCCGTGGTCCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACCCT
GCTGCTCGACGTCGCCGCCAAGGCCGCCGACGCCGAGAACCCGACCCTCTACGTCACGGGCGAGGAGTCCGCGAGCCAGG
TGCGTCTGCGGGCCGACCGGATCGGCGCCCTGCACGACCACCTCTACCTCGCCGCCGAGACCGACCTCTCCGCCGTGCTG
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTGATCCTCGACTCGGTCCAGACCGTCGCCTCGCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGCGCGTCCAAGGAGCGCGGCATGTCGACGCTCC
TGGTGGGCCATGTCACCAAGGACGGGGCCATCGCCGGCCCCCGTCTCCTCGAACACCTCGTCGACGTGGTCCTGCACTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTGGTCCGCGGCGTCAAGAACCGCTACGGCGCCACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCACCGACCCCAGCGGCCTCTTCCTCACCCGCCGCGACGAGCCCGTCCCCG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCGGAAGTGCAGTCGCTCACAGTCGACTCGCAACTG
CCCTCCCCCCGCCGTACGACGTCCGGCCTGGAGACCTCGCGGGTCTCGATGATGCTCGCGGTCCTGGAGCAGCGCGGCCG
GATCAGCGCCCTCGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTCTCGGAACCCGCCGCGGACCTCG
CGATCGCCCTGGCCCTGGCCTCGGCGGCGACCGACACCCCCCTGCCCAAGAACCTCGTGGCGATCGGTGAGGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCCGGCTGTCCGAAGCCCACCGCCTGGGGTTCACGCACGCGCTCGT
CCCGTCCGATCCGGGCAAGGTTCCTCCCGGTATGAAGGTGCTGGAAGTGGCCGACATGGGAGACGCGCTGCGGGTACTGC
CGCGATCCCGTCGGCGAGAGGCCCCACGGGACGAGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9Z0Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.046

96.588

0.416
  radA Streptococcus mitis SK321

42.667

95.949

0.409
  radA Streptococcus mitis NCTC 12261

42.667

95.949

0.409
  radA Streptococcus pneumoniae Rx1

42.222

95.949

0.405
  radA Streptococcus pneumoniae D39

42.222

95.949

0.405
  radA Streptococcus pneumoniae R6

42.222

95.949

0.405
  radA Streptococcus pneumoniae TIGR4

42.222

95.949

0.405