Detailed information NTG0033963

Bioinformatically predicted

Overview

• Name: pilF
• Type: Machinery gene
• Locus tag: UMN179_RS02185
• Genome accession: NC_015460
• Coordinates: 448273..448833 (+)
• Length: 186 a.a.
• NCBI ID: WP_013745261.1
• Uniprot ID: -
• Organism: Gallibacterium anatis UMN179
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 443273..453833

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UMN179_RS02150 (UMN179_00433)	-	443943..444122 (+)	180	WP_013745256.1	hypothetical protein	-
UMN179_RS02155 (UMN179_00434)	-	444119..444439 (+)	321	WP_013745257.1	type II toxin-antitoxin system RelE/ParE family toxin	-
UMN179_RS02160 (UMN179_00435)	-	444478..445080 (-)	603	WP_013745258.1	IS256 family transposase, variant Zn-binding type	-
UMN179_RS02175 (UMN179_00436)	folD	445953..446816 (+)	864	WP_013745259.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-
UMN179_RS02180 (UMN179_00437)	-	447134..448252 (+)	1119	WP_013745260.1	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	-
UMN179_RS02185 (UMN179_00438)	pilF	448273..448833 (+)	561	WP_013745261.1	type IV pilus biogenesis/stability protein PilW	Machinery gene
UMN179_RS02190 (UMN179_00439)	-	448977..450050 (+)	1074	WP_013745262.1	RodZ domain-containing protein	-
UMN179_RS02195 (UMN179_00440)	ispG	450075..451190 (+)	1116	WP_013745263.1	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	-
UMN179_RS02200 (UMN179_00441)	hisS	451212..452495 (+)	1284	WP_013745264.1	histidine--tRNA ligase	-
UMN179_RS02205 (UMN179_00442)	-	452507..453127 (+)	621	WP_013745265.1	YfgM family protein	-

Sequence

Protein

• Length: 186 a.a.
• Molecular weight: 20953.95 Da
• Isoelectric Point: 9.3348

>NTDB_id=33963 UMN179_RS02185 WP_013745261.1 448273..448833(+) (pilF) [Gallibacterium anatis UMN179]
MNKTMIKLKFFILLSSLFTLFACSHSVSNKPLSANAAAAKTRVELGLAYLSQGNPALAKANLDKALQHTPNDYLPYLGLA
YFYQHTQQLKLAGEYYQKALSLSPENGDVLNNYATYLCSQRQFDMAFNFFEQALNSKAYYHFADTYENIAICAVLAGDQN
KTEQALTQLEKYSVGKAKNLRQRLHK

Nucleotide

• Length: 561 bp

>NTDB_id=33963 UMN179_RS02185 WP_013745261.1 448273..448833(+) (pilF) [Gallibacterium anatis UMN179]
ATGAACAAAACAATGATTAAACTGAAATTTTTTATTCTGCTTTCCTCACTGTTTACGCTTTTTGCCTGTAGCCATTCAGT
TAGCAATAAACCACTTTCCGCTAATGCTGCTGCGGCAAAAACGCGTGTTGAATTAGGATTGGCTTATTTGTCGCAAGGCA
ATCCGGCATTGGCAAAAGCCAATTTAGATAAAGCGTTGCAACATACACCGAATGATTATTTGCCTTATCTAGGTTTGGCT
TATTTTTATCAACATACCCAACAACTCAAACTTGCCGGCGAATATTATCAAAAAGCGCTCTCTCTTTCGCCCGAGAATGG
CGATGTATTGAATAATTATGCAACTTACCTCTGCTCTCAACGCCAATTTGATATGGCATTTAACTTTTTTGAACAAGCAT
TAAACAGCAAAGCCTATTATCATTTTGCCGATACTTATGAAAACATTGCGATTTGCGCTGTTTTAGCCGGTGATCAAAAC
AAAACTGAACAAGCTTTAACCCAACTGGAGAAATATTCTGTCGGTAAAGCGAAAAATTTGCGGCAACGTTTGCATAAATA
A

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_8) (40-68)

• Tetratricopeptide repeat (TPR_17) (96-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilF	Glaesserella parasuis strain SC1401	44.809	98.387	0.441
pilF/pilF2	Haemophilus influenzae Rd KW20	46.988	89.247	0.419