Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   EKL02_RS17725 Genome accession   NZ_CP035311
Coordinates   3957829..3959304 (+) Length   491 a.a.
NCBI ID   WP_128903263.1    Uniprot ID   A0A410UX22
Organism   Janthinobacterium sp. 17J80-10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3952829..3964304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKL02_RS17700 (EKL02_17700) - 3954318..3955346 (+) 1029 WP_128903258.1 KpsF/GutQ family sugar-phosphate isomerase -
  EKL02_RS17705 (EKL02_17705) - 3955346..3955873 (+) 528 WP_128903259.1 HAD family hydrolase -
  EKL02_RS17710 (EKL02_17710) lptC 3955870..3956469 (+) 600 WP_128903260.1 LPS export ABC transporter periplasmic protein LptC -
  EKL02_RS17715 (EKL02_17715) lptA 3956508..3957056 (+) 549 WP_128903261.1 lipopolysaccharide transport periplasmic protein LptA -
  EKL02_RS17720 (EKL02_17720) lptB 3957073..3957813 (+) 741 WP_128903262.1 LPS export ABC transporter ATP-binding protein -
  EKL02_RS17725 (EKL02_17725) rpoN/rpoN1 3957829..3959304 (+) 1476 WP_128903263.1 RNA polymerase factor sigma-54 Machinery gene
  EKL02_RS17730 (EKL02_17730) raiA 3959407..3959763 (+) 357 WP_128903264.1 ribosome-associated translation inhibitor RaiA -
  EKL02_RS17735 (EKL02_17735) - 3959831..3960913 (+) 1083 WP_128903265.1 enoyl-CoA hydratase/isomerase family protein -
  EKL02_RS17740 (EKL02_17740) - 3960926..3962062 (-) 1137 WP_128903266.1 deoxyguanosinetriphosphate triphosphohydrolase -
  EKL02_RS17745 (EKL02_17745) aroKB 3962064..3963737 (-) 1674 Protein_3506 bifunctional shikimate kinase/3-dehydroquinate synthase AroKB -

Sequence

Protein


Download         Length: 491 a.a.        Molecular weight: 54758.44 Da        Isoelectric Point: 5.5032

>NTDB_id=339277 EKL02_RS17725 WP_128903263.1 3957829..3959304(+) (rpoN/rpoN1) [Janthinobacterium sp. 17J80-10]
MKQSLQLRVSQHLALTPQLQQSIRLLQLSTLELQQELEHILADNPMLERVDDPLDHSVRLLADGAINQTSSPAEKSAAED
APAADGETAYEGAEGGEAADGGNGEADWSFDDVARTGKNPEDDDSRPQLEAHHITLREHLLEQMRLTSHETRDRALMELI
IDAIDNNGYLEEPLEEIHARLPAELEIDPEELAIALKLVQSFEPAGVGARDAGECLALQIRRMPKVPMVTRRMALTIVEK
HLGLFAQRDFNKLKKLLDCDDEDLREAQCIIRQCNPHPGAVFASDAADYVVPDVIVKRGKNGWQVMLNHDVMPRLRVNAL
YANILKQNKGEGSLTSQLQEAKWLIKNMRQRFDTILRVSQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHESTISRVT
TQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIKQLIGAEDPKNPLSDSKIAEMLGEQGMVVARRTVAKYREAL
KIPPVNLRKSL

Nucleotide


Download         Length: 1476 bp        

>NTDB_id=339277 EKL02_RS17725 WP_128903263.1 3957829..3959304(+) (rpoN/rpoN1) [Janthinobacterium sp. 17J80-10]
ATGAAACAGTCACTTCAGCTACGCGTATCGCAGCATCTGGCATTGACGCCGCAGTTGCAGCAGTCGATCCGGCTGCTGCA
ATTGTCGACGCTGGAATTGCAGCAGGAACTGGAACATATCCTGGCTGACAATCCCATGCTCGAGCGCGTTGACGATCCGC
TCGACCATTCGGTGCGCCTGCTTGCCGATGGCGCCATCAACCAGACCAGCAGCCCGGCGGAAAAGTCCGCCGCCGAAGAT
GCGCCGGCGGCCGATGGCGAAACTGCCTATGAAGGCGCAGAAGGCGGCGAGGCGGCGGATGGCGGCAATGGCGAGGCCGA
CTGGAGTTTCGACGATGTCGCCCGCACCGGCAAGAACCCTGAAGACGACGACTCACGTCCGCAACTGGAAGCGCACCACA
TCACGTTGCGCGAACACCTGCTGGAACAGATGCGCCTGACCAGCCATGAGACGCGTGATCGCGCCCTGATGGAATTGATC
ATCGACGCCATTGACAACAATGGCTACCTGGAAGAGCCGCTCGAGGAAATTCATGCGCGCTTGCCTGCCGAGCTGGAAAT
CGATCCGGAAGAATTGGCCATCGCCCTGAAACTGGTGCAAAGTTTCGAGCCGGCCGGCGTCGGCGCGCGCGACGCCGGTG
AATGCCTCGCACTGCAAATCCGGCGCATGCCGAAAGTGCCGATGGTGACACGACGCATGGCGCTGACCATCGTCGAAAAG
CACCTCGGCCTGTTTGCGCAGCGCGACTTCAACAAGCTCAAGAAACTGCTCGATTGCGATGACGAGGATTTGCGCGAAGC
ACAGTGCATCATCCGCCAGTGCAACCCCCATCCCGGGGCTGTCTTTGCCAGCGATGCCGCCGACTATGTCGTGCCGGACG
TAATCGTCAAGCGCGGCAAGAACGGCTGGCAAGTCATGCTCAATCATGATGTGATGCCCCGGCTTCGCGTGAATGCCTTG
TACGCGAATATCCTCAAGCAAAACAAGGGTGAGGGCTCACTCACTTCGCAATTGCAGGAAGCAAAATGGCTCATCAAGAA
CATGCGCCAGCGCTTCGACACGATCCTGCGGGTTTCTCAAGCCATTGTGGAGCGACAACGCAATTTCTTTTCGCATGGCG
CCGTCGCCATGCGCCCTCTTGTCTTGCGCGAAATAGCTGATACACTAGGTTTACACGAGAGTACTATTTCTCGTGTAACA
ACGCAGAAGTACATGCTGACGCCGCATGGCATGTTTGAGCTGAAGTATTTCTTCGGCAGCCATGTCGCCACAGAAGCCGG
CGGCGAAGCTTCATCAACGGCGATACGGGCGTTGATCAAACAATTGATAGGAGCTGAAGACCCCAAGAACCCCCTCTCTG
ACAGCAAGATTGCAGAAATGCTGGGGGAGCAAGGCATGGTCGTTGCCCGGCGCACTGTGGCCAAGTACCGCGAAGCCTTG
AAAATCCCGCCAGTCAACCTGCGCAAGTCCTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(130-321)

Sigma-54, DNA binding domain (Sigma54_DBD)

(334-489)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410UX22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

60.396

100

0.621

Multiple sequence alignment