Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | EST43_RS06780 | Genome accession | NZ_CP035309 |
| Coordinates | 1326589..1327560 (-) | Length | 323 a.a. |
| NCBI ID | WP_138071469.1 | Uniprot ID | - |
| Organism | Macrococcoides canis strain KM0218 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1321589..1332560
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EST43_RS06745 (EST43_06740) | gcvT | 1322284..1323369 (-) | 1086 | WP_138072996.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| EST43_RS06750 (EST43_06745) | - | 1323507..1324013 (-) | 507 | WP_138071461.1 | shikimate kinase | - |
| EST43_RS06760 (EST43_06755) | - | 1324174..1324626 (-) | 453 | WP_138071463.1 | competence type IV pilus minor pilin ComGF | - |
| EST43_RS11690 | - | 1324571..1324813 (-) | 243 | WP_158290712.1 | hypothetical protein | - |
| EST43_RS06765 (EST43_06760) | comGD | 1324800..1325225 (-) | 426 | WP_164953585.1 | competence type IV pilus minor pilin ComGD | - |
| EST43_RS06770 (EST43_06765) | comGC | 1325218..1325550 (-) | 333 | WP_174804829.1 | competence type IV pilus major pilin ComGC | - |
| EST43_RS06775 (EST43_06770) | comGB | 1325565..1326638 (-) | 1074 | WP_138071467.1 | competence type IV pilus assembly protein ComGB | - |
| EST43_RS06780 (EST43_06775) | comGA | 1326589..1327560 (-) | 972 | WP_138071469.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EST43_RS06785 (EST43_06780) | - | 1327773..1328021 (+) | 249 | WP_086042733.1 | DUF2626 domain-containing protein | - |
| EST43_RS06790 (EST43_06785) | - | 1328048..1328668 (-) | 621 | WP_138071471.1 | MBL fold metallo-hydrolase | - |
| EST43_RS06795 (EST43_06790) | - | 1328758..1328997 (+) | 240 | WP_174804788.1 | DUF2759 domain-containing protein | - |
| EST43_RS06800 (EST43_06795) | - | 1329023..1329334 (-) | 312 | WP_138071473.1 | MTH1187 family thiamine-binding protein | - |
| EST43_RS06805 (EST43_06800) | - | 1329334..1330302 (-) | 969 | WP_138071475.1 | ROK family glucokinase | - |
| EST43_RS06810 (EST43_06805) | - | 1330299..1330490 (-) | 192 | WP_086042738.1 | YqgQ family protein | - |
| EST43_RS06815 (EST43_06810) | - | 1330495..1331943 (-) | 1449 | WP_138071477.1 | rhomboid family protein | - |
| EST43_RS06820 (EST43_06815) | - | 1331919..1332473 (-) | 555 | WP_158290713.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
Sequence
Protein
Download Length: 323 a.a. Molecular weight: 37245.84 Da Isoelectric Point: 6.8834
>NTDB_id=339237 EST43_RS06780 WP_138071469.1 1326589..1327560(-) (comGA) [Macrococcoides canis strain KM0218]
MEKLFNEIIEVAIIQSASDIHFIPNDKSISIKFRIHGDIEDYREIDDMLFRKLLSYIKFTAHLDVSEKNKAQSGIIQFNL
KDLRYNIRASTLPRSLGDEACVLRIIRQNFIDEYQTNDKILYNQIKKSSGIIIISGPTGSGKSTLMYQLVHYARNTLKRQ
IISIEDPVEQHIEGIIQVNVNEKAEITYHTAIKAILRCDPDIIMLGEIRDSVVAHQVINAGLSGHLVLTTLHANDCIGAL
FRLKEMGINTVDLYQSINLIINQRLVRKKDGTGRLLAYEFLTKKDIEKYLQGEHINYRTLTDQFKELYETNQISHYEFEK
FDL
MEKLFNEIIEVAIIQSASDIHFIPNDKSISIKFRIHGDIEDYREIDDMLFRKLLSYIKFTAHLDVSEKNKAQSGIIQFNL
KDLRYNIRASTLPRSLGDEACVLRIIRQNFIDEYQTNDKILYNQIKKSSGIIIISGPTGSGKSTLMYQLVHYARNTLKRQ
IISIEDPVEQHIEGIIQVNVNEKAEITYHTAIKAILRCDPDIIMLGEIRDSVVAHQVINAGLSGHLVLTTLHANDCIGAL
FRLKEMGINTVDLYQSINLIINQRLVRKKDGTGRLLAYEFLTKKDIEKYLQGEHINYRTLTDQFKELYETNQISHYEFEK
FDL
Nucleotide
Download Length: 972 bp
>NTDB_id=339237 EST43_RS06780 WP_138071469.1 1326589..1327560(-) (comGA) [Macrococcoides canis strain KM0218]
ATGGAAAAGTTATTCAATGAAATAATAGAGGTAGCAATTATACAAAGTGCATCAGATATTCACTTCATACCAAACGATAA
AAGCATATCTATCAAATTTAGGATACATGGTGATATTGAAGACTATAGAGAAATCGACGACATGTTATTCAGGAAATTAC
TTTCTTATATTAAATTTACAGCACATCTTGATGTATCAGAAAAGAATAAGGCACAGAGTGGAATCATCCAATTTAATCTG
AAAGACTTAAGATATAATATTCGCGCATCTACTTTACCTCGATCATTAGGCGATGAAGCATGTGTACTGAGAATCATCAG
ACAAAATTTTATAGATGAATATCAGACGAATGACAAGATATTGTACAATCAAATAAAAAAATCAAGTGGTATTATCATCA
TAAGTGGACCAACTGGAAGCGGGAAAAGCACATTGATGTATCAGCTTGTACATTATGCGAGGAACACATTGAAGAGACAA
ATAATATCAATAGAAGATCCTGTTGAACAGCATATTGAAGGAATTATACAGGTTAATGTTAACGAAAAAGCAGAGATAAC
GTATCATACTGCGATAAAGGCAATCCTTAGATGTGACCCGGATATCATTATGCTAGGTGAAATCAGAGATTCAGTCGTTG
CACATCAAGTGATCAATGCAGGACTAAGCGGTCATCTTGTTTTAACGACATTACATGCGAATGATTGCATCGGTGCATTA
TTTCGGTTAAAAGAAATGGGTATTAATACTGTTGATCTATATCAAAGTATCAATCTGATTATTAATCAAAGGCTTGTAAG
AAAAAAAGATGGGACGGGGCGTCTATTGGCCTATGAATTTTTAACAAAAAAGGATATTGAAAAATATTTACAAGGTGAAC
ATATTAACTATAGAACGTTGACCGATCAATTTAAGGAGCTCTATGAAACAAATCAGATTTCACACTATGAATTCGAAAAA
TTTGATCTATAA
ATGGAAAAGTTATTCAATGAAATAATAGAGGTAGCAATTATACAAAGTGCATCAGATATTCACTTCATACCAAACGATAA
AAGCATATCTATCAAATTTAGGATACATGGTGATATTGAAGACTATAGAGAAATCGACGACATGTTATTCAGGAAATTAC
TTTCTTATATTAAATTTACAGCACATCTTGATGTATCAGAAAAGAATAAGGCACAGAGTGGAATCATCCAATTTAATCTG
AAAGACTTAAGATATAATATTCGCGCATCTACTTTACCTCGATCATTAGGCGATGAAGCATGTGTACTGAGAATCATCAG
ACAAAATTTTATAGATGAATATCAGACGAATGACAAGATATTGTACAATCAAATAAAAAAATCAAGTGGTATTATCATCA
TAAGTGGACCAACTGGAAGCGGGAAAAGCACATTGATGTATCAGCTTGTACATTATGCGAGGAACACATTGAAGAGACAA
ATAATATCAATAGAAGATCCTGTTGAACAGCATATTGAAGGAATTATACAGGTTAATGTTAACGAAAAAGCAGAGATAAC
GTATCATACTGCGATAAAGGCAATCCTTAGATGTGACCCGGATATCATTATGCTAGGTGAAATCAGAGATTCAGTCGTTG
CACATCAAGTGATCAATGCAGGACTAAGCGGTCATCTTGTTTTAACGACATTACATGCGAATGATTGCATCGGTGCATTA
TTTCGGTTAAAAGAAATGGGTATTAATACTGTTGATCTATATCAAAGTATCAATCTGATTATTAATCAAAGGCTTGTAAG
AAAAAAAGATGGGACGGGGCGTCTATTGGCCTATGAATTTTTAACAAAAAAGGATATTGAAAAATATTTACAAGGTGAAC
ATATTAACTATAGAACGTTGACCGATCAATTTAAGGAGCTCTATGAAACAAATCAGATTTCACACTATGAATTCGAAAAA
TTTGATCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
49.39 |
100 |
0.502 |
| comGA | Staphylococcus aureus N315 |
49.39 |
100 |
0.502 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
38.037 |
100 |
0.384 |
| pilB | Glaesserella parasuis strain SC1401 |
34.012 |
100 |
0.362 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
34.513 |
100 |
0.362 |