Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ESP48_RS04320 Genome accession   NZ_CP035306
Coordinates   814754..815710 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain IDCC2201     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 809754..820710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ESP48_RS04285 (ESP48_04285) proC 810313..811083 (+) 771 WP_064355728.1 pyrroline-5-carboxylate reductase -
  ESP48_RS04290 (ESP48_04290) - 811113..811775 (-) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  ESP48_RS04295 (ESP48_04295) - 811872..812315 (-) 444 WP_011681680.1 hypothetical protein -
  ESP48_RS10105 (ESP48_04300) - 812389..812814 (-) 426 WP_014608739.1 CPBP family intramembrane glutamic endopeptidase -
  ESP48_RS10110 (ESP48_04305) - 812771..813046 (-) 276 WP_011681681.1 hypothetical protein -
  ESP48_RS04310 (ESP48_04310) - 813058..813256 (-) 199 Protein_823 helix-turn-helix transcriptional regulator -
  ESP48_RS04315 (ESP48_04315) - 813505..814698 (-) 1194 WP_014608740.1 acetate kinase -
  ESP48_RS04320 (ESP48_04320) comYH 814754..815710 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  ESP48_RS04325 (ESP48_04325) comGG 815755..816072 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  ESP48_RS04330 (ESP48_04330) comYF 816050..816487 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  ESP48_RS04335 (ESP48_04335) comGE 816471..816764 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  ESP48_RS04340 (ESP48_04340) comYD 816736..817164 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  ESP48_RS04345 (ESP48_04345) comYC 817124..817450 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  ESP48_RS04350 (ESP48_04350) comYB 817447..818547 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  ESP48_RS04355 (ESP48_04355) comGA/cglA/cilD 818429..819370 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  ESP48_RS04360 (ESP48_04360) - 819451..819813 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=339171 ESP48_RS04320 WP_011226622.1 814754..815710(-) (comYH) [Streptococcus thermophilus strain IDCC2201]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=339171 ESP48_RS04320 WP_011226622.1 814754..815710(-) (comYH) [Streptococcus thermophilus strain IDCC2201]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment