Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ESP48_RS03100 Genome accession   NZ_CP035306
Coordinates   585464..586498 (-) Length   344 a.a.
NCBI ID   WP_372430784.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain IDCC2201     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 580464..591498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ESP48_RS03075 (ESP48_03075) ilvD 580716..582434 (-) 1719 WP_011226435.1 dihydroxy-acid dehydratase -
  ESP48_RS03080 (ESP48_03080) - 582547..583728 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  ESP48_RS03090 (ESP48_03090) trmB 583964..584605 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ESP48_RS03095 (ESP48_03095) ccrZ 584615..585406 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  ESP48_RS03100 (ESP48_03100) pptB 585464..586498 (-) 1035 WP_372430784.1 ABC transporter permease Regulator
  ESP48_RS03105 (ESP48_03105) pptA 586498..587229 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  ESP48_RS03110 (ESP48_03110) - 587294..587713 (+) 420 WP_011681530.1 HIT family protein -
  ESP48_RS03115 (ESP48_03115) - 587710..588018 (+) 309 WP_064355815.1 hypothetical protein -
  ESP48_RS10050 - 588570..588740 (-) 171 WP_011226439.1 hypothetical protein -
  ESP48_RS03125 (ESP48_03125) - 588810..589445 (-) 636 WP_064355817.1 DUF4230 domain-containing protein -
  ESP48_RS10405 - 589464..589589 (-) 126 WP_011681534.1 hypothetical protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 39952.44 Da        Isoelectric Point: 10.4910

>NTDB_id=339162 ESP48_RS03100 WP_372430784.1 585464..586498(-) (pptB) [Streptococcus thermophilus strain IDCC2201]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLVAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKYTWYNLYLRAFLRSGDYVALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKFS
LILIGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=339162 ESP48_RS03100 WP_372430784.1 585464..586498(-) (pptB) [Streptococcus thermophilus strain IDCC2201]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAGATT
TTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTTCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAGTTG
TCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGG
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTCTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAATATA
CGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACGTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGATTGGAGTTATGCTAGTTTTGAGTCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

99.419

100

0.994

  pptB Streptococcus salivarius strain HSISS4

92.733

100

0.927


Multiple sequence alignment