Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   F1612_RS12065 Genome accession   NZ_CP043843
Coordinates   2399923..2400519 (-) Length   198 a.a.
NCBI ID   WP_000559156.1    Uniprot ID   Q8NY07
Organism   Staphylococcus aureus strain NCCP 16830     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2394923..2405519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1612_RS12060 (F1612_12270) - 2399613..2399718 (-) 106 Protein_2334 hypothetical protein -
  F1612_RS12065 (F1612_12275) recR 2399923..2400519 (-) 597 WP_000559156.1 recombination mediator RecR Machinery gene
  F1612_RS12070 (F1612_12280) - 2400526..2400843 (-) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  F1612_RS12075 (F1612_12285) dnaX 2400933..2402630 (-) 1698 WP_158173044.1 DNA polymerase III subunit gamma/tau -
  F1612_RS12080 (F1612_12290) - 2402699..2403223 (-) 525 WP_001167828.1 GNAT family N-acetyltransferase -
  F1612_RS12085 (F1612_12295) - 2403361..2403462 (-) 102 WP_031824659.1 hypothetical protein -
  F1612_RS12095 (F1612_12305) treR 2403862..2404590 (-) 729 WP_045173145.1 trehalose operon repressor -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22099.51 Da        Isoelectric Point: 4.7564

>NTDB_id=339125 F1612_RS12065 WP_000559156.1 2399923..2400519(-) (recR) [Staphylococcus aureus strain NCCP 16830]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=339125 F1612_RS12065 WP_000559156.1 2399923..2400519(-) (recR) [Staphylococcus aureus strain NCCP 16830]
ATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGCATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8NY07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475