Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   F1612_RS00305 Genome accession   NZ_CP043843
Coordinates   69258..70370 (-) Length   370 a.a.
NCBI ID   WP_158172925.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCCP 16830     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 64258..75370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1612_RS00295 (F1612_00310) gyrA 64608..67277 (-) 2670 WP_000819083.1 DNA gyrase subunit A -
  F1612_RS00300 (F1612_00315) gyrB 67314..69248 (-) 1935 WP_000255586.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  F1612_RS00305 (F1612_00320) recF 69258..70370 (-) 1113 WP_158172925.1 DNA replication/repair protein RecF Machinery gene
  F1612_RS00310 (F1612_00325) yaaA 70367..70612 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  F1612_RS00315 (F1612_00330) dnaN 70993..72126 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  F1612_RS00320 (F1612_00335) dnaA 72404..73765 (-) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  F1612_RS00325 (F1612_00340) rpmH 74496..74633 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  F1612_RS00330 (F1612_00345) rnpA 74754..75107 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42405.39 Da        Isoelectric Point: 6.4362

>NTDB_id=339041 F1612_RS00305 WP_158172925.1 69258..70370(-) (recF) [Staphylococcus aureus strain NCCP 16830]
MKLNTLQLENYRNYDEVTLKCHSDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=339041 F1612_RS00305 WP_158172925.1 69258..70370(-) (recF) [Staphylococcus aureus strain NCCP 16830]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATTCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTTAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.062

100

0.495