Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EQW00_RS04230 | Genome accession | NZ_CP035288 |
| Coordinates | 869609..870004 (+) | Length | 131 a.a. |
| NCBI ID | WP_002457121.1 | Uniprot ID | A0A7H5C5S7 |
| Organism | Staphylococcus epidermidis strain ATCC 14990 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 864609..875004
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQW00_RS04205 (EQW00_04205) | - | 866028..866432 (+) | 405 | WP_002447782.1 | F0F1 ATP synthase subunit epsilon | - |
| EQW00_RS04210 (EQW00_04210) | - | 866581..866814 (+) | 234 | WP_002456242.1 | DUF1146 family protein | - |
| EQW00_RS04215 (EQW00_04215) | murA | 866924..868189 (+) | 1266 | WP_001829978.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| EQW00_RS04220 (EQW00_04220) | fabZ | 868223..868660 (+) | 438 | WP_001829953.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| EQW00_RS04225 (EQW00_04225) | - | 868978..869418 (-) | 441 | WP_001829935.1 | YwpF-like family protein | - |
| EQW00_RS04230 (EQW00_04230) | ssb | 869609..870004 (+) | 396 | WP_002457121.1 | single-stranded DNA-binding protein | Machinery gene |
| EQW00_RS04235 (EQW00_04235) | - | 870392..871051 (+) | 660 | WP_001829904.1 | transglycosylase family protein | - |
| EQW00_RS04240 (EQW00_04240) | tenA | 871335..872024 (+) | 690 | WP_001829894.1 | thiaminase II | - |
| EQW00_RS04245 (EQW00_04245) | thiD | 872017..872838 (+) | 822 | WP_001832736.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| EQW00_RS04250 (EQW00_04250) | thiM | 872831..873619 (+) | 789 | WP_002469583.1 | hydroxyethylthiazole kinase | - |
| EQW00_RS04255 (EQW00_04255) | thiE | 873625..874263 (+) | 639 | WP_002505076.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15159.02 Da Isoelectric Point: 5.2661
>NTDB_id=338940 EQW00_RS04230 WP_002457121.1 869609..870004(+) (ssb) [Staphylococcus epidermidis strain ATCC 14990]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=338940 EQW00_RS04230 WP_002457121.1 869609..870004(+) (ssb) [Staphylococcus epidermidis strain ATCC 14990]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
74.046 |
100 |
0.74 |
| ssb | Staphylococcus aureus MW2 |
73.282 |
100 |
0.733 |