Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   F0T11_RS12860 Genome accession   NZ_CP043816
Coordinates   2107691..2108428 (-) Length   245 a.a.
NCBI ID   WP_050303812.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG251     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102691..2113428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T11_RS10970 (F0T11_12290) - 2103745..2104146 (-) 402 Protein_2132 pilin -
  F0T11_RS10975 (F0T11_12295) lpxC 2104274..2105197 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  F0T11_RS10980 - 2105772..2106120 (-) 349 Protein_2134 pilin -
  F0T11_RS10985 - 2106120..2106497 (-) 378 Protein_2135 pilin -
  F0T11_RS10990 (F0T11_12315) - 2106937..2107287 (-) 351 Protein_2136 pilin -
  F0T11_RS10995 (F0T11_12320) pilE 2107314..2107673 (-) 360 WP_033909688.1 pilin Machinery gene
  F0T11_RS12860 (F0T11_12325) pilE 2107691..2108428 (-) 738 WP_050303812.1 pilin Machinery gene
  F0T11_RS12160 (F0T11_12330) - 2108457..2108859 (-) 403 Protein_2139 pilin -
  F0T11_RS11015 (F0T11_12340) - 2108991..2109380 (-) 390 Protein_2140 pilin -
  F0T11_RS11020 (F0T11_12355) - 2110179..2110304 (+) 126 Protein_2141 IS110 family transposase -
  F0T11_RS11025 (F0T11_12370) - 2110853..2111542 (-) 690 WP_050157270.1 SprT family zinc-dependent metalloprotease -
  F0T11_RS11030 (F0T11_12375) - 2111539..2112282 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  F0T11_RS11035 (F0T11_12380) gmhB 2112312..2112875 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 26683.82 Da        Isoelectric Point: 9.2812

>NTDB_id=338876 F0T11_RS12860 WP_050303812.1 2107691..2108428(-) (pilE) [Neisseria gonorrhoeae strain NG251]
MSHHRVLPSAVTEYYPNHGKWPEDNTSAGVASPASNIKGKYVQKVEVNNGVVTATMASSNVNKEIKDKKLSLWAKREDGS
VKWFCGQPVTRANADAAKDDVNAAKDTNKIETKHLPSTCRDESSAGCTKTPEYYLNHGTWPEDNTSAGVASSAEIKGKYV
QKVEVAKGVVTATMKSDGVNKEIKGKKLSLWGRREDGSVKWFCGQPVKRDNAKADNDDVKADAADKDKIETKHLPSTCRD
TSSAK

Nucleotide


Download         Length: 738 bp        

>NTDB_id=338876 F0T11_RS12860 WP_050303812.1 2107691..2108428(-) (pilE) [Neisseria gonorrhoeae strain NG251]
ATCAGCCATCACCGGGTATTACCCTCAGCCGTCACCGAATATTACCCGAATCACGGCAAATGGCCGGAAGACAACACTTC
TGCCGGCGTGGCATCCCCCGCCTCCAACATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCAACAACGGCGTCGTTACCG
CCACAATGGCTTCAAGCAACGTAAACAAAGAAATCAAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCG
GTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGCCAACGCCGACGCCGCCAAAGACGACGTCAACGCCGCCAAAGACAC
CAACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCACAAAAACACCCGAATATT
ACCTGAATCACGGCACATGGCCGGAAGACAACACTTCTGCCGGCGTGGCATCCTCCGCCGAAATCAAAGGCAAATATGTT
CAGAAAGTTGAAGTCGCAAAAGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATCAAAGGCAAAAA
ACTCTCCCTGTGGGGCAGGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACAACGCCAAAG
CCGACAACGACGACGTCAAAGCCGACGCCGCCGACAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGTGAT
ACGTCATCTGCCAAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(9-120)

Pilin (bacterial filament) (Pilin)

(128-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

76.068

47.755

0.363