Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EQM06_RS05805 Genome accession   NZ_CP035281
Coordinates   1276111..1277958 (+) Length   615 a.a.
NCBI ID   WP_128745432.1    Uniprot ID   A0A410PV37
Organism   Aminipila luticellarii strain JN-18     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1271111..1282958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQM06_RS05785 (EQM06_05785) - 1271816..1272778 (+) 963 WP_128745428.1 glycosyltransferase family 8 protein -
  EQM06_RS05790 (EQM06_05790) - 1272775..1273698 (+) 924 WP_128745429.1 lysophospholipid acyltransferase family protein -
  EQM06_RS05795 (EQM06_05795) - 1273802..1274242 (+) 441 WP_128745430.1 MarR family winged helix-turn-helix transcriptional regulator -
  EQM06_RS05800 (EQM06_05800) rcrP 1274354..1276114 (+) 1761 WP_128745431.1 ABC transporter ATP-binding protein Regulator
  EQM06_RS05805 (EQM06_05805) rcrQ 1276111..1277958 (+) 1848 WP_128745432.1 ABC transporter ATP-binding protein Regulator
  EQM06_RS05810 (EQM06_05810) - 1278103..1279587 (+) 1485 WP_128745433.1 NAD(P)/FAD-dependent oxidoreductase -
  EQM06_RS05815 (EQM06_05815) - 1279687..1280505 (+) 819 WP_330548373.1 pirin family protein -
  EQM06_RS05820 (EQM06_05820) - 1280541..1281482 (-) 942 WP_128745435.1 DDE-type integrase/transposase/recombinase -
  EQM06_RS05825 (EQM06_05825) - 1281696..1282790 (+) 1095 WP_128745436.1 hypothetical protein -

Sequence

Protein


Download         Length: 615 a.a.        Molecular weight: 67772.83 Da        Isoelectric Point: 8.8844

>NTDB_id=338872 EQM06_RS05805 WP_128745432.1 1276111..1277958(+) (rcrQ) [Aminipila luticellarii strain JN-18]
MSENIRKRPGVMGGPRGMGRAVEKSQDFKGTWIKLIRYCKAYLPVIIFAMLAAAAGTVLQIIGPDKLKDMTNEITKGLPA
LINGQMVVGAINMDHVVCIAVLLACFYAGSAVLNFAQSFTMATVTQKISKTMRTDISRKINRLPLKYFDKTSYGDVLSRV
TNDVDAIGQTMNQSIGTLVTAVTMFVGSLLMMLYTNWIMALTAVGASILGFALMGILMKKSQKYFMAQQSGLGNVNGHIE
EIYSGHNIVKVYNGGNSAKKTFEEINKNLYNSAWKSQFLSGLMMPLMQFIGNFGYVAVCVVGASLAMNGKISFGVIVAFM
MYIRLFTQPLTQMAQAANNLQRTAAAGERVFEFLEEKELEDESQKPKALENVKGKVEFRHVKFGYVPEKTVIRDFSTTID
PGQKVAIVGPTGAGKTTIVNLLMRFYDLDGGEILLDGTPIHQVPRENVHEQFGMVLQDSWLFEGTIKENIIYSKQGITEE
QVVDACKKVGLHHFIKTLPKGYDTILNDKASLSEGQKQLITIARAMIQNAPLLILDEATSSVDTRTERIVQSAMDQLTVG
RTSFVIAHRLSTIKNADLILVMKDGDVIESGNHDELLAQKGFYAELYNSQFESAA

Nucleotide


Download         Length: 1848 bp        

>NTDB_id=338872 EQM06_RS05805 WP_128745432.1 1276111..1277958(+) (rcrQ) [Aminipila luticellarii strain JN-18]
ATGAGTGAAAATATAAGGAAAAGGCCGGGAGTAATGGGCGGACCTCGGGGAATGGGAAGAGCCGTCGAAAAATCGCAGGA
TTTTAAAGGAACATGGATCAAACTGATCCGATATTGTAAAGCGTATCTTCCGGTGATTATTTTTGCCATGCTGGCGGCAG
CGGCCGGTACGGTACTTCAAATTATCGGACCGGATAAGCTGAAGGATATGACTAATGAGATTACAAAAGGACTTCCGGCA
TTGATAAACGGTCAGATGGTCGTGGGCGCTATAAATATGGATCACGTTGTCTGTATTGCGGTACTGCTCGCATGCTTTTA
TGCCGGCTCTGCGGTACTGAATTTTGCGCAGAGTTTTACCATGGCAACGGTTACACAAAAAATATCCAAGACCATGCGTA
CGGACATTTCTCGGAAAATAAACCGGCTGCCATTAAAATATTTTGATAAAACAAGCTATGGGGATGTACTGAGCCGGGTT
ACCAATGATGTGGATGCCATCGGCCAGACTATGAATCAGAGCATTGGCACACTGGTCACAGCGGTGACTATGTTTGTCGG
CTCATTGCTCATGATGCTTTATACAAATTGGATCATGGCTCTGACAGCGGTTGGCGCCAGTATCTTGGGATTTGCCCTGA
TGGGTATCCTTATGAAAAAATCCCAGAAATATTTTATGGCACAGCAGAGCGGACTCGGCAATGTGAACGGGCATATCGAG
GAGATTTATTCCGGGCACAACATTGTGAAGGTATATAATGGGGGAAACTCAGCAAAAAAGACTTTTGAAGAAATCAATAA
AAACTTATACAACAGTGCATGGAAATCACAATTCTTATCCGGTCTGATGATGCCGCTTATGCAATTTATCGGAAACTTCG
GATATGTGGCTGTCTGCGTAGTGGGAGCATCATTGGCTATGAACGGCAAAATTTCTTTTGGAGTCATTGTGGCGTTTATG
ATGTATATCCGTCTGTTTACGCAGCCGCTGACTCAGATGGCACAGGCGGCAAATAATTTACAGAGAACTGCCGCCGCCGG
AGAACGAGTATTTGAATTTTTGGAGGAAAAAGAGCTGGAGGATGAAAGTCAGAAACCGAAAGCCTTGGAAAATGTAAAAG
GAAAAGTAGAGTTTAGACATGTTAAGTTCGGTTATGTGCCTGAAAAGACTGTCATACGTGATTTTTCAACCACAATAGAC
CCGGGGCAGAAGGTAGCCATAGTCGGTCCTACCGGTGCAGGCAAGACTACGATTGTCAACCTGCTTATGAGATTCTACGA
CTTGGACGGCGGTGAAATCCTATTGGACGGAACGCCGATTCATCAGGTACCGCGAGAAAATGTTCACGAGCAATTCGGCA
TGGTGTTACAGGATTCATGGCTCTTTGAAGGTACGATTAAGGAAAATATTATTTACAGCAAACAGGGAATAACAGAGGAA
CAGGTAGTGGATGCCTGTAAAAAAGTAGGCTTGCATCATTTTATCAAAACCTTGCCAAAAGGGTATGATACCATCTTAAA
TGATAAAGCCAGCTTGTCGGAAGGACAAAAACAGCTGATTACCATTGCCCGTGCCATGATTCAAAACGCTCCCCTTCTTA
TTTTAGACGAGGCAACCAGTTCAGTGGATACCCGTACAGAGCGTATCGTGCAATCCGCTATGGATCAGCTGACGGTGGGC
AGAACCTCCTTTGTTATTGCACACAGACTTTCTACCATTAAAAATGCGGATTTGATCCTTGTCATGAAGGACGGAGACGT
CATCGAAAGCGGTAACCACGATGAATTGCTCGCTCAAAAAGGCTTCTATGCGGAACTCTACAACAGCCAGTTTGAGTCGG
CAGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-540)

ABC transporter transmembrane region (ABC_membrane)

(47-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410PV37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.317

93.333

0.535

Multiple sequence alignment