Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   F1539_RS08255 Genome accession   NZ_CP043772
Coordinates   1633337..1634572 (+) Length   411 a.a.
NCBI ID   WP_005661954.1    Uniprot ID   A0ABY1VUA2
Organism   Haemophilus influenzae biotype aegyptius strain HE24/F3037     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1628337..1639572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1539_RS08245 (F1539_08250) tig 1631325..1632623 (+) 1299 WP_006995277.1 trigger factor -
  F1539_RS08250 (F1539_08255) clpP 1632746..1633327 (+) 582 WP_005661952.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  F1539_RS08255 (F1539_08260) clpX 1633337..1634572 (+) 1236 WP_005661954.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  F1539_RS08260 (F1539_08265) secE 1634716..1635132 (+) 417 WP_005658616.1 preprotein translocase subunit SecE -
  F1539_RS08265 (F1539_08270) nusG 1635134..1635691 (+) 558 WP_005648601.1 transcription termination/antitermination protein NusG -
  F1539_RS08270 (F1539_08275) - 1635842..1636594 (+) 753 WP_013526357.1 VacJ family lipoprotein -
  F1539_RS08275 (F1539_08280) - 1636651..1637040 (+) 390 WP_005630808.1 RidA family protein -
  F1539_RS08280 (F1539_08285) - 1637109..1638275 (-) 1167 WP_013526356.1 DUF262 domain-containing protein -
  F1539_RS08285 (F1539_08290) - 1638320..1639467 (-) 1148 Protein_1611 adenine-specific methyltransferase EcoRI family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45733.32 Da        Isoelectric Point: 4.7428

>NTDB_id=338717 F1539_RS08255 WP_005661954.1 1633337..1634572(+) (clpX) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
MTDKDKDLHCSFCGKEKGEVDRLIAGTDGYICNECIELCHSMLEESHDKNLEESAVENEEKLPTPHEIRAHLDDYVIGQD
YAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVL
QKLLQNCEYDTEKAEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKLDTSK
ILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLPMIAPLSELDEDAL
IQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGARGLRSIVEAVLLDTMYDLPSLENLQKVIVDEST
IVDNLAPKLEY

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=338717 F1539_RS08255 WP_005661954.1 1633337..1634572(+) (clpX) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
ATGACAGACAAAGATAAAGATTTGCACTGCTCTTTTTGCGGAAAGGAAAAAGGCGAAGTAGATAGATTAATTGCTGGCAC
AGACGGTTATATTTGTAATGAATGTATTGAACTTTGTCACTCAATGCTTGAAGAAAGTCATGATAAAAATTTAGAGGAAA
GTGCGGTAGAAAATGAAGAAAAATTACCAACGCCTCACGAAATTCGCGCTCATCTAGATGATTATGTTATCGGTCAAGAT
TATGCGAAAAAAGTGCTTTCTGTGGCAGTTTATAATCATTATAAACGCTTGCGAACTAACTATGAAAGCAATGATGTAGA
GCTTGGTAAAAGTAATATTTTACTTATAGGTCCTACAGGTAGCGGAAAAACGTTACTTGCGCAAACATTAGCTCGTCGTT
TAAATGTACCCTTTGCGATGGCGGATGCAACCACATTAACGGAAGCTGGTTATGTGGGGGAAGATGTGGAGAATGTGTTA
CAGAAACTTTTGCAAAATTGTGAATACGATACTGAAAAAGCAGAGAAAGGCATTATTTATATTGATGAAATTGATAAAAT
TAGCCGTAAATCGGAAGGCGCATCAATTACTCGAGATGTTTCAGGAGAGGGGGTGCAACAGGCTTTATTAAAACTTATTG
AAGGTACAATCGCTTCCATTCCACCTCAAGGCGGTCGTAAACATCCACAACAAGAAATGGTAAAATTGGATACGTCTAAA
ATTCTCTTTATTTGCGGCGGTGCATTTGCAGGATTAGATAAAATTATTGATAAACGCACTCAAACCAGTACGAGTATTGG
TTTTAATGCCAAAGTTGAAAAAGATGAAAAACAACAATCTCTTTCTGAATTATTCCGTCAAGTTGAACCTGATGATTTAA
TGAAATTTGGTTTAATTCCAGAATTTATTGGACGCTTGCCAATGATTGCCCCATTAAGTGAATTAGACGAAGATGCGCTG
ATACAAATTCTCACAAAACCAAAAAACGCATTAATTAAACAATATCAAGCCTTATTTGGATTGGAAAAAGTAGAATTGGA
TTTCACACCAGAAGCATTAAAAGCAATGGCGAAAAAAGCACTTGAAAGAAAAACGGGTGCGCGTGGCTTACGTTCTATCG
TAGAAGCAGTATTGTTAGATACAATGTATGATCTACCGTCTCTTGAGAATTTACAAAAAGTTATCGTTGATGAATCGACA
ATTGTAGATAATCTTGCACCAAAATTAGAATATTAG

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(315-392)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

57.353

99.27

0.569
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56

97.324

0.545

Multiple sequence alignment