Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   EQH16_RS02820 Genome accession   NZ_CP035264
Coordinates   531906..532637 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901921     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 526906..537637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH16_RS02795 (EQH16_02915) - 528514..528870 (+) 357 WP_000114423.1 hypothetical protein -
  EQH16_RS02800 (EQH16_02920) dnaJ 529272..530408 (+) 1137 WP_001066292.1 molecular chaperone DnaJ -
  EQH16_RS02805 - 530730..530969 (-) 240 WP_001813906.1 hypothetical protein -
  EQH16_RS02810 (EQH16_02930) - 531131..531418 (-) 288 WP_000777760.1 hypothetical protein -
  EQH16_RS02815 (EQH16_02935) - 531428..531838 (-) 411 WP_001278301.1 HIT family protein -
  EQH16_RS02820 (EQH16_02940) pptA 531906..532637 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  EQH16_RS02825 (EQH16_02945) - 532634..533683 (+) 1050 WP_000653752.1 ABC transporter permease -
  EQH16_RS02830 (EQH16_02950) - 533851..534180 (-) 330 WP_000132572.1 hypothetical protein -
  EQH16_RS02835 (EQH16_02955) - 534457..534795 (+) 339 WP_000682121.1 LytTR family DNA-binding domain-containing protein -
  EQH16_RS02840 (EQH16_02960) comE/blpR 534800..535537 (+) 738 WP_238090292.1 response regulator transcription factor Regulator
  EQH16_RS02845 (EQH16_02965) - 535551..536891 (+) 1341 WP_001017622.1 sensor histidine kinase -
  EQH16_RS02850 (EQH16_02970) blpC 536933..537088 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=338601 EQH16_RS02820 WP_000889923.1 531906..532637(+) (pptA) [Streptococcus pneumoniae strain TVO_1901921]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=338601 EQH16_RS02820 WP_000889923.1 531906..532637(+) (pptA) [Streptococcus pneumoniae strain TVO_1901921]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment