Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   MDS_RS23935 Genome accession   NC_015410
Coordinates   5155342..5156016 (-) Length   224 a.a.
NCBI ID   WP_024310040.1    Uniprot ID   A0A1H2MNK5
Organism   Ectopseudomonas mendocina NK-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5150342..5161016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MDS_RS23915 (MDS_4701) - 5152419..5153633 (-) 1215 WP_013717743.1 HDOD domain-containing protein -
  MDS_RS23920 (MDS_4703) rpmG 5153897..5154052 (-) 156 WP_003464575.1 50S ribosomal protein L33 -
  MDS_RS23925 (MDS_4704) rpmB 5154063..5154299 (-) 237 WP_003242523.1 50S ribosomal protein L28 -
  MDS_RS25970 - 5154645..5154788 (+) 144 WP_158307029.1 hypothetical protein -
  MDS_RS23930 (MDS_4705) - 5154785..5155339 (+) 555 WP_013717744.1 hypothetical protein -
  MDS_RS23935 (MDS_4706) radC 5155342..5156016 (-) 675 WP_024310040.1 DNA repair protein RadC Machinery gene
  MDS_RS23940 (MDS_4707) coaBC 5156157..5157365 (+) 1209 WP_013717746.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  MDS_RS23945 (MDS_4708) dut 5157368..5157823 (+) 456 WP_013717747.1 dUTP diphosphatase -
  MDS_RS26085 algC 5159056..5160450 (+) 1395 WP_202796097.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24813.49 Da        Isoelectric Point: 7.1880

>NTDB_id=33852 MDS_RS23935 WP_024310040.1 5155342..5156016(-) (radC) [Ectopseudomonas mendocina NK-01]
MSIRDWPAAERPREKLLEQGAASLTDAELLAIFLRTGVTGKSAVDLARYLLSEFGSLRALLEADLTGFSQHLGLGPAKYA
QLQAVLEMSRRHLAERLRRDSALESPQAVRDYLKAQLRHEPHEVFGCLFLDAKHRVLAFEVLFRGSIDSASVYPRQVVKR
SLANNAAAVILTHNHPSGVSEPSQADRVLTQRLKDALALVEVRVLDHFIVGDGEPLSMAELGWM

Nucleotide


Download         Length: 675 bp        

>NTDB_id=33852 MDS_RS23935 WP_024310040.1 5155342..5156016(-) (radC) [Ectopseudomonas mendocina NK-01]
ATGAGCATTCGCGACTGGCCCGCGGCAGAGCGCCCGCGGGAGAAACTGCTGGAGCAGGGCGCGGCTTCGCTGACCGATGC
CGAGCTGCTGGCGATCTTCCTGCGCACAGGAGTTACCGGCAAGAGTGCGGTGGACCTGGCGCGCTACCTGCTGAGCGAGT
TCGGCAGCCTGAGGGCCCTGCTCGAGGCCGATCTGACGGGCTTCAGCCAGCACCTCGGCCTGGGCCCTGCCAAGTACGCA
CAATTGCAGGCCGTTCTGGAAATGTCGCGGCGCCATTTGGCCGAGCGCCTGCGCCGCGATTCGGCGCTGGAGAGTCCGCA
GGCCGTGCGCGACTACCTTAAGGCACAGCTGCGTCACGAACCGCATGAGGTGTTCGGCTGCCTGTTTCTCGATGCCAAGC
ACCGTGTGCTGGCCTTCGAGGTGTTGTTTCGCGGCAGCATCGACAGTGCCAGTGTCTACCCCAGGCAGGTGGTCAAGCGT
TCGCTGGCCAACAATGCCGCCGCCGTCATCCTCACCCATAACCACCCATCGGGCGTGTCGGAGCCCAGTCAGGCCGACCG
CGTGCTGACCCAGCGTCTCAAGGATGCTCTGGCGCTGGTCGAGGTGCGCGTGCTCGATCATTTCATCGTTGGCGATGGTG
AGCCGCTGTCGATGGCCGAGCTGGGCTGGATGTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H2MNK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

48.325

93.304

0.451
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

36.607

100

0.366