Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FZN58_RS05290 Genome accession   NZ_CP043763
Coordinates   1019798..1020349 (+) Length   183 a.a.
NCBI ID   WP_032583750.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BfR-CA-14430     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1014798..1025349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZN58_RS05255 (FZN58_05255) - 1014988..1015413 (+) 426 WP_002859154.1 GNAT family N-acetyltransferase -
  FZN58_RS05260 (FZN58_05260) - 1015477..1016097 (+) 621 WP_149831501.1 nitroreductase family protein -
  FZN58_RS05265 (FZN58_05265) - 1016097..1016702 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  FZN58_RS05270 (FZN58_05270) pgsA 1016827..1017363 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FZN58_RS05275 (FZN58_05275) rseP 1017360..1018466 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  FZN58_RS05280 (FZN58_05280) - 1018459..1019325 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  FZN58_RS05285 (FZN58_05285) rpsF 1019412..1019789 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  FZN58_RS05290 (FZN58_05290) ssb 1019798..1020349 (+) 552 WP_032583750.1 single-stranded DNA-binding protein Machinery gene
  FZN58_RS05295 (FZN58_05295) rpsR 1020360..1020620 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  FZN58_RS05300 (FZN58_05300) lon 1020680..1023055 (-) 2376 WP_002853487.1 endopeptidase La -
  FZN58_RS05305 (FZN58_05305) - 1023072..1023719 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  FZN58_RS05310 (FZN58_05310) fliW 1023880..1024269 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  FZN58_RS05315 (FZN58_05315) proC 1024269..1025000 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  FZN58_RS05320 (FZN58_05320) ctsT 1024997..1025299 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20738.66 Da        Isoelectric Point: 5.0431

>NTDB_id=338519 FZN58_RS05290 WP_032583750.1 1019798..1020349(+) (ssb) [Campylobacter jejuni strain BfR-CA-14430]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNVPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=338519 FZN58_RS05290 WP_032583750.1 1019798..1020349(+) (ssb) [Campylobacter jejuni strain BfR-CA-14430]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGTTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361

Multiple sequence alignment