Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   EQH18_RS09570 Genome accession   NZ_CP035262
Coordinates   1903183..1904136 (-) Length   317 a.a.
NCBI ID   WP_000345084.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901923     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1898183..1909136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH18_RS09545 (EQH18_10075) - 1898945..1899568 (-) 624 WP_000932661.1 hypothetical protein -
  EQH18_RS09550 (EQH18_10080) jag 1899619..1900605 (-) 987 WP_000260025.1 RNA-binding cell elongation regulator Jag/EloR -
  EQH18_RS09555 (EQH18_10085) - 1900624..1901448 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  EQH18_RS09560 (EQH18_10090) rnpA 1901423..1901794 (-) 372 WP_000739246.1 ribonuclease P protein component -
  EQH18_RS09565 (EQH18_10095) - 1901942..1903132 (-) 1191 WP_000167755.1 acetate kinase -
  EQH18_RS09570 (EQH18_10100) comYH 1903183..1904136 (-) 954 WP_000345084.1 class I SAM-dependent methyltransferase Machinery gene
  EQH18_RS09575 (EQH18_10105) - 1904197..1904784 (-) 588 Protein_1884 class I SAM-dependent methyltransferase -
  EQH18_RS09580 (EQH18_10110) comGG/cglG 1904921..1905334 (-) 414 WP_000265617.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQH18_RS09585 (EQH18_10115) comGF/cglF 1905312..1905773 (-) 462 WP_000250529.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQH18_RS09590 (EQH18_10120) comGE/cglE 1905736..1906038 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQH18_RS09595 (EQH18_10125) comGD/cglD 1906001..1906405 (-) 405 WP_000588002.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQH18_RS09600 (EQH18_10130) comGC/cglC 1906398..1906724 (-) 327 WP_000738623.1 comG operon protein ComGC Machinery gene
  EQH18_RS09605 (EQH18_10135) comGB/cglB 1906726..1907742 (-) 1017 WP_077141332.1 competence type IV pilus assembly protein ComGB Machinery gene
  EQH18_RS09610 (EQH18_10140) comGA/cglA/cilD 1907690..1908631 (-) 942 WP_000249550.1 competence type IV pilus ATPase ComGA Machinery gene
  EQH18_RS09615 (EQH18_10145) - 1908707..1909072 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35646.83 Da        Isoelectric Point: 4.2270

>NTDB_id=338490 EQH18_RS09570 WP_000345084.1 1903183..1904136(-) (comYH) [Streptococcus pneumoniae strain TVO_1901923]
MDFEKIEQAYIYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFTEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGFKYLKSDGYAIFLAPSDLLTGPQ
SDLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=338490 EQH18_RS09570 WP_000345084.1 1903183..1904136(-) (comYH) [Streptococcus pneumoniae strain TVO_1901923]
ATGGATTTTGAAAAAATTGAACAAGCTTATATCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACGCCAGATGCTATTGCCTTACTTTTGGTATTTATTGTGGAAGAGTTGTTTAC
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGCCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCTCATCACTTGCTCA
TGGAACAAGGGTTTAAGTACCTTAAGTCAGATGGATATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCGGTCCTCAA
AGTGATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.313

98.738

0.536
  comYH Streptococcus mutans UA159

53.994

98.738

0.533

Multiple sequence alignment