Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   F1D59_RS16700 Genome accession   NZ_CP043638
Coordinates   3752244..3752843 (-) Length   199 a.a.
NCBI ID   WP_046777817.1    Uniprot ID   -
Organism   Streptomyces sp. INR7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3747244..3757843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1D59_RS16680 (F1D59_16755) - 3748127..3748681 (-) 555 WP_234330675.1 SigE family RNA polymerase sigma factor -
  F1D59_RS16685 (F1D59_16760) - 3749136..3750212 (-) 1077 WP_030648063.1 aspartate-semialdehyde dehydrogenase -
  F1D59_RS16690 (F1D59_16765) - 3750209..3751483 (-) 1275 WP_030648061.1 aspartate kinase -
  F1D59_RS16695 (F1D59_16770) - 3751604..3752251 (-) 648 WP_030648059.1 DUF5063 domain-containing protein -
  F1D59_RS16700 (F1D59_16775) recR 3752244..3752843 (-) 600 WP_046777817.1 recombination mediator RecR Machinery gene
  F1D59_RS16705 (F1D59_16780) - 3752898..3753242 (-) 345 WP_075970649.1 YbaB/EbfC family nucleoid-associated protein -
  F1D59_RS16710 (F1D59_16785) - 3753533..3754279 (+) 747 WP_030648054.1 SLATT domain-containing protein -
  F1D59_RS16715 (F1D59_16790) - 3754320..3754970 (-) 651 WP_030648052.1 hypothetical protein -
  F1D59_RS16720 (F1D59_16795) - 3755074..3755739 (-) 666 WP_030648050.1 GntR family transcriptional regulator -
  F1D59_RS16725 (F1D59_16800) - 3755902..3757260 (-) 1359 WP_030648047.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21841.17 Da        Isoelectric Point: 5.0142

>NTDB_id=338461 F1D59_RS16700 WP_046777817.1 3752244..3752843(-) (recR) [Streptomyces sp. INR7]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCGICRDPRRDATV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGEVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=338461 F1D59_RS16700 WP_046777817.1 3752244..3752843(-) (recR) [Streptomyces sp. INR7]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTCCGCCGCCTCGCGCACGCGCTGCTGGAGGTCAAGGACAAGGTCC
GCTTCTGCGCCGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCGGCATCTGCCGCGACCCGCGCCGGGACGCGACGGTC
ATCTGTGTCGTGGAGGAGCCGAAGGACGTGGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGCAGGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGACCTGCGCATCCGCGAGCTGCTGGCGCGCCTGGCGGACGGCG
AGGTGACCGAGCTGATCCTCGCCACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGACCTGGAGTACGCGGACGAGGTCACGCT
GGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472

Multiple sequence alignment