Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   F0316_RS09790 Genome accession   NZ_CP043554
Coordinates   2110062..2111726 (+) Length   554 a.a.
NCBI ID   WP_149560452.1    Uniprot ID   -
Organism   Vibrio cholerae strain RFB16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2105062..2116726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0316_RS09775 (F0316_09775) dnaK 2106129..2108036 (-) 1908 WP_149560451.1 molecular chaperone DnaK -
  F0316_RS19865 - 2108194..2108307 (+) 114 WP_001889140.1 hypothetical protein -
  F0316_RS09780 (F0316_09780) grpE 2108300..2108902 (-) 603 WP_000064038.1 nucleotide exchange factor GrpE -
  F0316_RS09785 (F0316_09785) nadK 2109048..2109932 (+) 885 WP_000742830.1 NAD(+) kinase -
  F0316_RS09790 (F0316_09790) recN 2110062..2111726 (+) 1665 WP_149560452.1 DNA repair protein RecN Machinery gene
  F0316_RS09795 (F0316_09795) bamE 2111885..2112244 (+) 360 WP_001160912.1 outer membrane protein assembly factor BamE -
  F0316_RS09800 (F0316_09800) - 2112322..2112627 (-) 306 WP_001918351.1 RnfH family protein -
  F0316_RS09805 (F0316_09805) - 2112630..2113064 (-) 435 WP_000815880.1 SRPBCC family protein -
  F0316_RS09810 (F0316_09810) smpB 2113248..2113733 (+) 486 WP_000162689.1 SsrA-binding protein SmpB -
  F0316_RS09825 (F0316_09825) - 2114530..2115891 (+) 1362 WP_172626009.1 type II toxin-antitoxin system HipA family toxin -
  F0316_RS09830 (F0316_09830) - 2115888..2116355 (+) 468 WP_000804848.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 554 a.a.        Molecular weight: 61434.08 Da        Isoelectric Point: 5.6631

>NTDB_id=338389 F0316_RS09790 WP_149560452.1 2110062..2111726(+) (recN) [Vibrio cholerae strain RFB16]
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEYQLSMLDQYSGHADLLKATR
HAYQNWRQASNQLKQLHENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEHKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQNVSHTLIDLAEMDNKLTTLPSMVAEALIQLEETYHELRNYLDSIDVDPERMSYVEERYSKVMSLARKHHVLPE
ELYQHHQALLQQIAQLDCSDEKMSALASEVEVLYQTFVTAADKLHKSRTRYAKELDKLISQSMHELSMEKAQFKIEVMQD
NAHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA

Nucleotide


Download         Length: 1665 bp        

>NTDB_id=338389 F0316_RS09790 WP_149560452.1 2110062..2111726(+) (recN) [Vibrio cholerae strain RFB16]
ATGCTGGCTCACTTAAGTATCAATAACTTCGCTATCGTAAAGTCACTACAACTCGAATTATCAAAAGGAATGACCACCAT
CACCGGCGAAACCGGTGCCGGTAAATCCATTGCGATTGATGCTTTAGGTTTATGCCTTGGTGGTCGAGCCGAAGCCAGCA
TGGTGCGTCAAGGTGAAGATAAAACCGAAGTCAGCGCCGCCTTTCATCTGGATAACAATCTGCTCGCTAGCCGTTGGTTA
GAAGATAATGAACTGCTTGAAGGCAAAGAGTGCATTTTGCGCCGAATCATCACCAAAGATGGGCGCTCTAAAGCCTTTAT
TAATGGCAGCCCAGTTCCGCTCTCTCAACTCAAAACATTGGGGCAACTGCTGATCAATGTGCATGGTCAACACGCACATC
AGCAACTGATGAAACCGGAATATCAACTCAGCATGCTTGATCAATACTCAGGTCATGCCGACTTGCTCAAAGCCACGCGT
CACGCCTACCAAAATTGGCGTCAAGCGAGTAATCAGCTCAAACAGCTGCACGAAAATAGCCAGCAGAATCAGGCACAATT
ACAACTTTTGGAATACCAAATCAAAGAGCTCAACGAATTGGCTCTCGGTGAGGATGAGTTTGTCGAGCTAGAACAAGAGC
ACAAACGCTTAGCTAATAGCGGAGATCTGGCACTTAATTGCCAACGTGCGATTGAACTGCTCAATGAAGGGGAAGAAGTA
AACGCATTAGGTCTATTACAAAACGTTAGCCATACGCTGATCGATCTGGCTGAAATGGACAACAAGCTGACAACGCTCCC
TTCTATGGTGGCAGAGGCACTGATTCAGCTTGAAGAAACTTACCATGAACTGCGCAACTATCTCGATTCTATTGATGTCG
ATCCAGAACGTATGTCATATGTTGAGGAACGCTATTCCAAAGTAATGTCTCTGGCCCGTAAGCACCATGTACTGCCAGAA
GAGCTGTATCAGCATCATCAAGCGCTGCTACAGCAGATCGCTCAGTTGGATTGTTCTGATGAAAAAATGTCAGCACTGGC
GAGTGAAGTGGAAGTGCTCTACCAAACTTTCGTTACTGCTGCGGACAAGCTGCATAAATCACGCACTCGCTACGCGAAAG
AGCTAGATAAGCTGATAAGCCAAAGTATGCATGAACTCAGCATGGAAAAAGCCCAATTCAAAATTGAGGTAATGCAAGAT
AACGCGCACTCTTCACCATTAGGCTTTGATGCGGTGACGTTTTTAGTTTCGACTAACCCCGGACAACCACTGCAACCGAT
CGCCAAAGTCGCATCTGGTGGTGAACTATCACGTATGTCATTGGCGATCCAAGTGATCACTGCACAGAAAGTCGATACTC
CAAGCCTGATTTTTGATGAAGTTGACGTGGGTATTTCAGGTCCAACCGCAGCGGTTGTCGGCAAACTATTACGCAAATTA
GGTGAATCAACTCAGGTACTGTGTGTTACCCACTTACCTCAAGTCGCAGGTTGTGGACACCATCAGCTGTTTGTCGCCAA
ACAAACCAAAGCAGGCAAAACTGAAACTCAAATGCTCAAATTGGATCAGGAACAGCGCATTGCTGAACTCGCACGCTTGC
TTGGAGGCAGCCAAATCACCGAATCAACACTCGCGAATGCTAAAGAGCTATTAATCGCAGCCTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

36.945

100

0.375
  recN Bacillus subtilis subsp. subtilis str. 168

34.843

100

0.361

Multiple sequence alignment