Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   EQH20_RS10185 Genome accession   NZ_CP035260
Coordinates   1999147..1999905 (+) Length   252 a.a.
NCBI ID   WP_000410381.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901925     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1994147..2004905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH20_RS10155 (EQH20_10690) comE 1994744..1995496 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  EQH20_RS10160 (EQH20_10695) comD/comD1 1995493..1996818 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  EQH20_RS10165 (EQH20_10700) comC/comC1 1996839..1996964 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  EQH20_RS10175 (EQH20_10710) rlmH 1997246..1997725 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  EQH20_RS10180 (EQH20_10715) htrA 1997908..1999089 (+) 1182 WP_000681598.1 S1C family serine protease Regulator
  EQH20_RS10185 (EQH20_10720) spo0J 1999147..1999905 (+) 759 WP_000410381.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29255.63 Da        Isoelectric Point: 8.9980

>NTDB_id=338355 EQH20_RS10185 WP_000410381.1 1999147..1999905(+) (spo0J) [Streptococcus pneumoniae strain TVO_1901925]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTNYFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIIYFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=338355 EQH20_RS10185 WP_000410381.1 1999147..1999905(+) (spo0J) [Streptococcus pneumoniae strain TVO_1901925]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATTATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTATTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504

Multiple sequence alignment